RNA id: trnav-aac_55


Basic Information

Item Value
RNA id trnav-aac_55
length 67
RNA type tRNA
GC content 0.55
exon number 1
gene id trnav-aac_55
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 16629501 ~ 16629567 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTTCCATAGTGTAGTCACGTCTGCTTAACACGCAGAAGGTCCTGGGTTCGAGCCCCAGTGGAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279248 lncRNA downstream 97634 16531511 ~ 16531867 (-) True G205883
TU279224 lncRNA downstream 226421 16401078 ~ 16403080 (-) True G205859
TU279174 lncRNA downstream 281942 16343241 ~ 16347559 (-) True G205814
TU279167 lncRNA downstream 429498 16196106 ~ 16200003 (-) True G205812
TU279153 lncRNA downstream 562785 16065584 ~ 16066716 (-) True G205800
TU279415 lncRNA upstream 115653 16745220 ~ 16745579 (-) True G205997
TU279421 lncRNA upstream 121255 16750822 ~ 16775704 (-) True G206002
TU279426 lncRNA upstream 152559 16782126 ~ 16785058 (-) True G206006
TU279424 lncRNA upstream 157110 16786677 ~ 16787388 (-) True G206004
TU279428 lncRNA upstream 163489 16793056 ~ 16798716 (-) True G206007
XM_022683664.1 mRNA downstream 2387 16604417 ~ 16627114 (-) False cstf2
XM_007248760.3 mRNA downstream 4967 16604417 ~ 16624534 (-) False cstf2
XM_022683663.1 mRNA downstream 4967 16604417 ~ 16624534 (-) False cstf2
XM_022683662.1 mRNA downstream 4967 16604417 ~ 16624534 (-) True cstf2
XM_022683658.1 mRNA downstream 83809 16535765 ~ 16545692 (-) True arl13a
XM_022683667.1 mRNA upstream 83465 16713032 ~ 16715374 (-) True LOC103041961
XM_022683668.1 mRNA upstream 83465 16713032 ~ 16715246 (-) False LOC103041961
XM_007248758.3 mRNA upstream 90905 16720472 ~ 16726339 (-) True tspan6
XM_022683671.1 mRNA upstream 117625 16747192 ~ 16773307 (-) True sytl4
XM_007232889.3 mRNA upstream 146905 16776472 ~ 16781235 (-) True trmt12
trnav-uac_3 other downstream 788 16628641 ~ 16628713 (-) True trnav-uac_3
trnav-uac_2 other downstream 1984 16627445 ~ 16627517 (-) True trnav-uac_2
trnav-uac_1 other downstream 3186 16626243 ~ 16626315 (-) True trnav-uac_1
XR_002651770.1 other downstream 263857 16203937 ~ 16365644 (-) False drp2
trnae-uuc_23 other downstream 486142 16143288 ~ 16143359 (-) True trnae-uuc_23
trnav-uac_4 other upstream 1412 16630979 ~ 16631051 (-) True trnav-uac_4
TU279578 other upstream 641680 17271247 ~ 17300957 (-) False LOC103041988
TU279905 other upstream 1410139 18039706 ~ 18041913 (-) False LOC111195732
TU280287 other upstream 2208802 18838369 ~ 18838916 (-) True G206575
TU280694 other upstream 3834136 20463703 ~ 20512144 (-) False LOC103040850