RNA id: XM_022669406.1


Basic Information

Item Value
RNA id XM_022669406.1
length 2997
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC103039306
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 128356 ~ 166390 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCCACTGACTGAGGCCAGTTCCGTATTTCTGCTCCTCTAGGTACTTTCTGTCTCATGTGACGAGCCAGGTCGAGCCCTAGAGAAGCGCAGAGGCTGAGAGAGGGAGCAGCGCGCCACCATGCAGGAGGAGTGAGGAGGGCTGCTGCTCtgtctgtgctgctgctgctgctgctggaagaagaggaggaggagataCAGAGGGCTTCAGCACCCGAGCTGAATGGTGAAAATGCAGCACACATGATATCGAGATATCACCAAACATTGAGCATGGCTGGATGTAAAGGCAAGGCGCCATCCAGCAAAGCCAGGCTTTGAGCCATACCTCCAGCTGTTCTCTCCATATATCTTCATCCGCCctgtacacacactctcccACATCCCCCTTCAGCCTGGTTGCAACAGGTGAAAATGACCACGCCAAGGAAGCACTTAGTCAAGGATTTCAACCACTTCATCACCTGTTATGTGTGTAAAGGATATCTGATCAAGCCCACCACCGTGACAGAGTGCCTGCACACCTTTTGTAAAAGCTGCATCGTCCAGCATTTCGAAGACAGCAACGACTGTCCCAAATGCGGCATCCAAGTGCACGAAACAAACCCACTGGAAATGTTGAGATTGGACAACACTTTAGAAGAAATCATATTCAAGCTTGTGCCTGACCTTAGAGAAAAGGAGCAACAGCGGGAGATTGAATTCTGGAAAAGGAACAAGTCAAAAGAAAACGGTGATGATGATGGCCCCAGGTGTAAAAGGGCGAAGCTGGATGACGACATTGATGACAGAGGGGACGGAGACTACCATAGAAGTGATCCTCAGATAGCCATCTGCCTGGACTGTCTACGCAACAACAGTCAGCTGGGAGAGAATATTGTAAAGGTCAGCTGTTTTAaATACGACAGATCCTTACAgcctgtgtgtctctctctgcagctagATGTTCTATGCAATGGAGAGATCATGGGGAAAGATCACACCATGGAATTCATCTACATGACGAGATGGAGGCTTCGGGGTGAAAATGACTACCCAATGGTACTTGAATATCGACCTCGAATTGACTTTGGCTAGATGATGAGCTGATGCTCCTGCACTACTTTCAGCCTATCAGCACACAGAACAGTGAATGGTCGTGCTACACAGTAGCGACTCAAACACACCAGTCtactttcttttacattttttttagcagttcCTCTCCAGGAGTTTTTACTCACTCTTCAGATTTCCCAGCACAGCAGGGACTGGAACTCTTGGTGCCCCGGATTGTTGGAAGGATGTTTGTTTGCCATGTGTGTGTCTCGCTCTGTTTGCTGGTCTAGCAGCAGAACTGTTGACGTACGTTTTCACGGGCCCAGGAGAGGAGTCTCCAACTCTTCAAGTGCATTCAGTCGTTATGTAAGTTGCTTGTATATCAGTAACTATTATAGTGCCTTTTCCACACATTGTGTTTCAGTGATGATAGTCACTGATCCCAGGAGCCTTGTTTCTGTACAGATAGGCCTGTGTAATCTGAATTCTGTTCATTGTGttcatataaaaatacacacagtgAAGTGTCTTATCAGCCCCAGTCTTCATCTGgtattattaaaataagctacttgtgtcaatttcatatttttattacatcCCTCGCTGCCTCGTACTGTACCTGACCCGTAAAGGACAGCAGTGTCTACAGTATCTACTGGGATTTGttccaatatgttttttttgttgtttttttttatgaagaagGAAGCTTTATTATCAGCAGTAGAGAAAGCATGCAGGCGTTCACTAGAGTGAAAGAAGGAATAGATTCATACGTTATACAACTGTTTAGAATTACCATCTGGAGTTTATATAGTTTAGCCAGTTACAGTAACTAGCAAAAGTATAGACAACacatttttgcactttttattaTGCAATTGCCTTTTTTTCTTACAGGTTTTAATTTTTCTGTGTTAAAAGCAAACAGATTCATTGGTCTTTCATGTTTGATCttgacctccacagttcccctgaacagTGTTCTGCACCGTAAAATCTTTCTTTAGTGGGAAAATACTGCTAGTCACTGCAGCTCCAAATAGACATtgtgaaattaaacaaaacattaattgTGGCATGTATAAGAAATATGacaactttattttttgtttgtttctaatCTGCTGAGAAAtctaatataatgtatatttaacaaCACATGTAATTAGACCAGGTTTGGGCACCCTTTACCAAATGACAatgactgttttcttttttccacaatttaaatttaaatgtaaaaccttcaaaaaacttcaaattaattacaattatacgataaaaatattatttaatattgataGCTAAAATACAAGAGTTTGGTGCAACTGTAGAAAATACATATCCATACATCTGTATTATACATGTGTAGTTTAgttttagcagtttttttttttaagccagaAGTTGCACTCATAGCTTTAGCATGCACCATTTGATACTGTTTGCAGCAGTAAAAACGAAGGTATACCCTTAAATGTTAAATCCATAATTAATTGGACTCTAAACTTTTGTCTGTGTTAAAGCAAACAAATTAATTAGTCTTTTTTAGATCTGATCctgacctccacagttcccctgaacagTGTTCTAAGCCGTAAAATCTTTCTCTAGCACTGGTACAATCTTTGAAGAGCCACAGAATTTATAAAACTTATGGAAATTTGATCAAACTGACGGTTCCTAACTAGAGTTAGGATAGAAATGCCTCTGACCCAATGTGCTAATCAAGGTCTGAGACCTTGTCTGTGAAATTGCACAGGgcacagtttatttttaaggctataaaatatggaaaaaaactacatttcccacatctcagtaaaaaaaaaaaagaaaaagacaaatgtGTCATTTAGCCAAGGGTGCCCAAATggtcatatacagctctgaacaaaaatgagaccacttaaaaatgatgagttcctctggaatataatcaagaggaagatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44543 lncRNA upstream 27340 96356 ~ 101016 (+) False rpp30
TU44541 lncRNA upstream 70168 57629 ~ 58188 (+) True G33160
TU44526 lncRNA upstream 89340 38493 ~ 39016 (+) True G33147
TU44503 lncRNA upstream 104494 21445 ~ 23862 (+) True G33141
TU44588 lncRNA downstream 63292 226800 ~ 231917 (+) False hectd2
TU44599 lncRNA downstream 107142 270650 ~ 306318 (+) True G33211
TU44592 lncRNA downstream 124524 288032 ~ 324053 (+) True G33206
TU44621 lncRNA downstream 197919 361427 ~ 362460 (+) False G33231
TU44622 lncRNA downstream 197919 361427 ~ 362460 (+) False G33231
XM_007251149.2 mRNA upstream 27305 96303 ~ 101051 (+) True rpp30
XM_007251148.2 mRNA upstream 80793 42719 ~ 47563 (+) True htr7
XM_022668844.1 mRNA downstream 17561 181069 ~ 229078 (+) True hectd2
XM_022669427.1 mRNA downstream 255949 419457 ~ 424471 (+) True LOC111192417
XM_007234066.3 mRNA downstream 293663 457171 ~ 483231 (+) True LOC103045384
XM_007234074.3 mRNA downstream 572320 735828 ~ 745143 (+) False acbd4
XM_007234075.3 mRNA downstream 572352 735860 ~ 745143 (+) True acbd4
TU44688 other downstream 255502 419010 ~ 424404 (+) False LOC111192417
trnac-gca_9 other downstream 717859 881367 ~ 881438 (+) True trnac-gca_9
TU45029 other downstream 819683 983191 ~ 985372 (+) False LOC103023950
trnal-aag other downstream 828804 992312 ~ 992393 (+) False trnal-aag
trnar-ucg other downstream 957888 1121396 ~ 1121468 (+) True trnar-ucg

Expression Profile