RNA id: TU44588


Basic Information

Item Value
RNA id TU44588
length 3239
lncRNA type sense_over
GC content 0.37
exon number 2
gene id hectd2
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 181069 ~ 231917 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTCTATACAGCATTTTGATTGGCTGcataatttttatataaatgttgttaattattttttttttctttaagagtaAATGGGAGTAAAAGTGTATGCCCATCTACTGTGCTTCTGCTTAACTGATACGCGCCATTTAGGACATACTTTCTCAGGGCAGGCCTCCGAGAAGACAATTAATATCATTTTGACCCACATTATTCATTCCTTTTCATTTTCGTCCTAGAGTTTCATTTGCTTGACATCCACCAAATTGCATGCACTCCTTCAGGGCAGGCCTCTGACATCTAATGCACAGTTATACTGACTTGAAAttatctttttgttgttttttcatcgctcattccttttttttgacaccttttaattttctcaaacaCAAAAGCCATAGAGTTCCTGTCTCCTGAGAGTTTACAAACTTCTTGCACTcaccttttgtttttttcttccctcgTTCCTttcatttactttcatttttgttCTATGTTCCTGCCTGGGTCAAtgtttaatgatattaaatCAGATGAGCTGGAGGGCTTTGGGCAACCAGGAGAAATctaaaaacaagtttttttttttgttctcttttcctcttttttattagtttttttaaataatgtgcttATGTGTCTAAAACCTCTGCAGAgtactatatgtatatattttctgtattttattttaacactcaTGTGACACCCATGCCAAGAGAAAGTCCTTGTTTGCTCTGTTCTTGGTGAATGACAAGATTCTGATTGAGGTACAGTAGCTAAAGAAAGCACATTAGGCAACATGAATTCCGCACTGTAGCTAGATTTGAAGTTTAACTAGAATTTAGCCGTTCCATATGactgtggtgtggtgtggtgtggtgtggtgtggtgtgatgtggtgtgtgtatgtatgcatgtatgtgcGTGTTAATAGTTGCGGTTTGTATTTGTAATGAACCAGGATTCCAGGAAGAATCTAGTTAAAGTGTACCGGGTTGCAGGTGTTTGGACTCAGGATATCGTCATcattaagacaaaaaaaaaccttgtatcaaaatcagatgatgatgatgattggaCCAGTAGATGGGCTCAGTTTTGGTCCATTTTACTTGGAGTAAACTTGgagtaaaatcttttttaaaaaactgattcCCATTGAGAGTTAAAGTTTTCTCCTTCTCCTCTAAAGTTGCAATTATgcagatacaaggtttttgtccATTACTGAAGACATATTGGTTTGCCTTATGTACATTAACATACATCTAGGACCAAACCTAGATATgttgcattaaaatattttattgtgttgtgttttgtatgAATGACAGAATATCAGCATTCGATATGTTCAGGACTTCAGTATAGTGAAAGTTTATTTGTGGAGAACTATTTAAACGGTTAGCGCTACTAAAGATTGACAGCTTTGATTTTGCTTGGCTAGCAGGGGGTTGGAGTCTAATGCAATCCCACAGTCCGGCAGTGGAGAGGCTGAAAATAGGCCAGAGAGAGGCTTGGTCTGTGTGAAAATAGCTTTGCTAACAGTCTGTCACTAGCGCTAGTGCTGCTCTGCTCTAAGTgcttaaagtgacagtgttcCGACTCCTTGGTTACAGGCTACAAAGCCTCTTTGTTAGAGTGTAATTGATTCCTGAGATTCTCCACTGTTTGGGAGGTTAAGCCTGTTAAAAATTCTAAAGTTAAAAAGCTGAAACTGTTCTTTGTGCTCAGAAACGGATTTGTTCTGTATATAATTCTGAAAAGTCTTGACGACCCTTTTGTAACCTCTTTGAAGGGAAAGGAACAATGCTAACATGTCTTTTGACTTTTGTGTCGGTTAAAGTGATCCTTGTGATGACTAGCTATAGTGAGTGATGATAGCTTGTATCTCTGTGGtagatattgtgtgtgtgtgttagtactCCCCTTTACTCCTAAAAATAATGGTGCTACAAAGGGTTCTTTAAAATGACAGTCCAGAAGTTTTTTTGCAAGTATGTGTATTGCACTAAGCAAAGCAGAAGAGTACTTTGAAAACATGCATAGTGGTTCAGTATCATTTCAGAGTAGATGAATCAGGTGGGATTCTGCATTCTAGATTCTGTcctgctttcttttattttgccaGTTTGaattctgtgtttgtttagtaTAACAGTGTATGAATAAGCAGGTGAAGGTTAAGTTTGCTGCAGCGCAAAAAAATCAAAAGCTTTCAGAAAGACATGGAAATAATAACTCACAGGAAAACCTACCAGAcccctgtgtgtttttttttttttttttttttagaattaatagaTTGTGACCTTGCAGAAATGTCTACAATAATGCTATTTATGAAAATGTTCTGTCCCCTATCCACTCAGGAAGATTACTGCTTTCAGTTTTAAAGAAGAACATCTTATAGACTTTAACCAAAGCTGTAGAACAGTGGTTCTACGGTGTCTGTAATGTTGTATAAAATACAGGAGAAAACTTTATAGATCAGTCATTTATAATATTCTGCATGCagcaatttagttttttttatgttatatttgttGTACCACTTTGGGatgctttgaatttgatattaGCACATTAACTGTCACATGATATCaaaagagtaaataagtgacACTGTTTTGCTGCCATTACTAAATACCAGTAAATTAATTTTCTGTCCAGTCAGAAAAACAAATGGCTCTTTCTTTAAACCAATTTCTATAATACAGTGGTGCAACATACTGATGccactgtattaaaaataaaaggaaaaatCTGAAATTTGCTGGTGGATAACTAATAATGAATTCTTAAATGTGATGCAGAGGACTTATTTATTCCTGTTCAGATGTTGGACCCCTGTTCTACAGCACTGATCAAAGAACCCTTGTAGAACTATTATTTTGAAGAGATTTGGGTACAGATTGGACGCTGAGGTTTGTGACATCAAACGATGTGgagattaatttattttacaactGTCTGTCTTAAAAACAGATTGGATGAGTACAGTTCTAGAAAATGAGAATCAAAGCTCTGCTGGTAGCTCTTTGATTGAATGGTCAGAAAGATCTGAGTGATCTTGCTAATAGAATAGCTCTTTCTTGCCTTGTCTTTGTAAATGGCTGAACTCTGGTAATGTTATACgaactgttctttttttctttttctttttttcgtcTCTTGTCATCAGCCACAATCTTGCAACTGTTCACTTTATTGCTTCATGTCTTGTATGACTGAATACAAAtgtatttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44554 lncRNA upstream 60410 155652 ~ 166390 (+) True LOC103039306
TU44543 lncRNA upstream 125784 96356 ~ 101016 (+) False rpp30
TU44541 lncRNA upstream 168612 57629 ~ 58188 (+) True G33160
TU44526 lncRNA upstream 187784 38493 ~ 39016 (+) True G33147
TU44503 lncRNA upstream 202938 21445 ~ 23862 (+) True G33141
TU44599 lncRNA downstream 38733 270650 ~ 306318 (+) True G33211
TU44592 lncRNA downstream 56115 288032 ~ 324053 (+) True G33206
TU44621 lncRNA downstream 129510 361427 ~ 362460 (+) False G33231
TU44622 lncRNA downstream 129510 361427 ~ 362460 (+) False G33231
TU44623 lncRNA downstream 129510 361427 ~ 362460 (+) True G33231
XM_022669406.1 mRNA upstream 63292 128356 ~ 163508 (+) False LOC103039306
XM_007251149.2 mRNA upstream 125749 96303 ~ 101051 (+) True rpp30
XM_007251148.2 mRNA upstream 179237 42719 ~ 47563 (+) True htr7
XM_022669427.1 mRNA downstream 187540 419457 ~ 424471 (+) True LOC111192417
XM_007234066.3 mRNA downstream 225254 457171 ~ 483231 (+) True LOC103045384
XM_007234074.3 mRNA downstream 503911 735828 ~ 745143 (+) False acbd4
XM_007234075.3 mRNA downstream 503943 735860 ~ 745143 (+) True acbd4
XM_007234076.3 mRNA downstream 503963 735880 ~ 745143 (+) False acbd4
TU44555 other upstream 81438 128385 ~ 145362 (+) False LOC103039306
TU44688 other downstream 187093 419010 ~ 424404 (+) False LOC111192417
trnac-gca_9 other downstream 649450 881367 ~ 881438 (+) True trnac-gca_9
TU45029 other downstream 751274 983191 ~ 985372 (+) False LOC103023950
trnal-aag other downstream 760395 992312 ~ 992393 (+) False trnal-aag
trnar-ucg other downstream 889479 1121396 ~ 1121468 (+) True trnar-ucg

Expression Profile