RNA id: TU44685


Basic Information

Item Value
RNA id TU44685
length 427
lncRNA type sense_over
GC content 0.47
exon number 2
gene id LOC111192417
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 419010 ~ 424471 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGGTTTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTATGGTAGTGGCTTCAGTTGTGTCAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44657 lncRNA upstream 17698 396111 ~ 401312 (+) True G33246
TU44661 lncRNA upstream 17698 396111 ~ 401312 (+) False G33246
TU44670 lncRNA upstream 17698 396111 ~ 401312 (+) False G33246
TU44672 lncRNA upstream 17698 396111 ~ 401312 (+) False G33246
TU44656 lncRNA upstream 20200 396111 ~ 398810 (+) False G33246
TU44712 lncRNA downstream 2568 422529 ~ 423389 (+) False LOC111192417
TU44719 lncRNA downstream 65132 485093 ~ 485304 (+) True G33256
TU44828 lncRNA downstream 80516 500477 ~ 576299 (+) False G33312
XR_002649834.1 lncRNA downstream 80522 500483 ~ 504588 (+) True LOC111192340
XR_002649833.1 lncRNA downstream 139600 559561 ~ 576144 (+) False LOC103046496
XM_022668844.1 mRNA upstream 189932 181069 ~ 229078 (+) True hectd2
XM_022669406.1 mRNA upstream 255502 128356 ~ 163508 (+) False LOC103039306
XM_007251149.2 mRNA upstream 317959 96303 ~ 101051 (+) True rpp30
XM_007251148.2 mRNA upstream 371447 42719 ~ 47563 (+) True htr7
XM_007234066.3 mRNA downstream 37210 457171 ~ 483231 (+) True LOC103045384
XM_007234074.3 mRNA downstream 315867 735828 ~ 745143 (+) False acbd4
XM_007234075.3 mRNA downstream 315899 735860 ~ 745143 (+) True acbd4
XM_007234076.3 mRNA downstream 315919 735880 ~ 745143 (+) False acbd4
XM_007234073.2 mRNA downstream 332627 752588 ~ 754996 (+) True LOC103047415
TU44555 other upstream 273648 128385 ~ 145362 (+) False LOC103039306
trnac-gca_9 other downstream 461406 881367 ~ 881438 (+) True trnac-gca_9
TU45029 other downstream 563230 983191 ~ 985372 (+) False LOC103023950
trnal-aag other downstream 572351 992312 ~ 992393 (+) False trnal-aag
trnar-ucg other downstream 701435 1121396 ~ 1121468 (+) True trnar-ucg
trnam-cau_18 other downstream 701840 1121801 ~ 1121872 (+) True trnam-cau_18

Expression Profile