RNA id: TU44739


Basic Information

Item Value
RNA id TU44739
length 2988
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G33270
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 226997 ~ 231863 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAAGATTGTGGCTGATGACAAGAgacgaaaaaaagaaaaagaaaaaaagaacagttcGTATAACATTACCAGAGTTCAGCCATTTACAAAGACAAGGCAAGAAAGAGCTATTCTATTAGCAAGATCACTCAGATCTTTCTGACCATTCAATCAAAGAGCTACCAGCAGAGCTTTGATTCTCATTTTCTAGAACTGTACTCATCCAATCTGTTTTTAAGACAGACagttgtaaaataaattaatctcCACATCGTTTGATGTCACAAACCTCAGCGTCCAATCTGTACCCAAATCTCTTCAAAATAATAGTTCTACAAGGGTTCTTTGATCAGTGCTGTAGAACAGGGGTCCAACATCTGAACAGGAATAAATAAGTCCTCTGCATCACATTTAAGAATTCATTATTAGTTATCCACCAGCAAATTTCAGatttttccttttatttttaatacagtggCATCAGTATGTTGCACCACTGTATTATAGAAATTGGTTTAAAGAAAGAGCCATTTGTTTTTCTGACTGGACAGAAAATTAATTTACTGGTATTTAGTAATGGCAGCAAAACAGTgtcacttatttactcttttGATATCATGTGACAGTTAATGTGCtaatatcaaattcaaagcatCCCAAAGTGGTACaacaaatataacataaaaaaaactaaattgctGCATGCAGAATATTATAAATGACTGATCTATAAAGTTTTCTCCTGTATTTTATACAACATTACAGACACCGTAGAACCACTGTTCTACAGCTTTGGTTAAAGTCTATAAGATGTTCTTCTTTAAAACTGAAAGCAGTAATCTTCCTGAGTGGATAGGGGACAGAACATTTTCATAAATAGCATTATTGTAGACATTTCTGCAAGGTCACAAtctattaattctaaaaaaaaaaaaaaaaaaaaacacacaggggTCTGGTAGGTTTTCCTGTGAGTTATTATTTCCATGTCTTTCTGAAAGCTTTTGATTTTTTTGCGCTGCAGCAAACTTAACCTTCACCTGCTTATTCATACACTGTTAtactaaacaaacacagaattCAAACtggcaaaataaaagaaagcaggACAGAATCTAGAATGCAGAATCCCACCTGATTCATCTACTCTGAAATGATACTGAACCACTATGCATGTTTTCAAAGTACTCTTCTGCTTTGCTTAGTGCAATACACATACTTGCAAAAAAACTTCTGGACTGTCATTTTAAAGAACCCTTTGTAGCACCATTATTTTTAGGAGTAAAGGGGagtactaacacacacacacaatatctaCCACAGAGATACAAGCTATCATCACTCACTATAGCTAGTCATCACAAGGATCACTTTAACCGACACAAAAGTCAAAAGACATGTTAGCATTGTTCCTTTCCCTTCAAAGAGGTTACAAAAGGGTCGTCAAGACTTTTCAGAATTATATACAGAACAAATCCGTTTCTGAGCACAAAGAACAGTTTCAGCTTTTTAACTTTAGAATTTTTAACAGGCTTAACCTCCCAAACAGTGGAGAATCTCAGGAATCAATTACACTCTAACAAAGAGGCTTTGTAGCCTGTAACCAAGGAGTCGgaacactgtcactttaagcACTTAGAGCAGAGCAGCACTAGCGCTAGTGACAGACTGTTAGCAAAGCTATTTTCACACAGACCAAGCCTCTCTCTGGCCTATTTTCAGCCTCTCCACTGCCGGACTGTGGGATTGCATTAGACTCCAACCCCCTGCTAGCCAAGCAAAATCAAAGCTGTCAATCTTTAGTAGCGCTAACCGTTTAAATAGTTCTCCACAAATAAACTTTCACTATACTGAAGTCCTGAACATATCGAATGCTGATATTCTGTCATTcatacaaaacacaacacaataaaatattttaatgcaacATATCTAGGTTTGGTCCTAGATGTATGTTAATGTACATAAGGCAAACCAATATGTCTTCAGTAATggacaaaaaccttgtatctgcATAATTGCAACTTTAGAGGAGAAGGAGAAAACTTTAACTCTCAATGGgaatcagttttttaaaaaagattttactcCAAGTTTACTCCAAGTAAAATGGACCAAAACTGAGCCCATCTACTGGtccaatcatcatcatcatctgattttgatacaaggtttttttttgtcttaatgATGACGATATCCTGAGTCCAAACACCTGCAACCCGGTACACTTTAACTAGATTCTTCCTGGAATCCTGGTTCATTACAAATACAAACCGCAACTATTAACACgcacatacatgcatacatacacacaccacatcacaccacaccacaccacaccacaccacaccacagtCATATGGAACGGCTAAATTCTAGTTAAACTTCAAATCTAGCTACAGTGCGGAATTCATGTTGCCTAATGTGCTTTCTTTAGCTACTGTACCTCAATCAGAATCTTGTCATTCACCAAGAACAGAGCAAACAAGGACTTTCTCTTGGCATGGGTGTCACAtgagtgttaaaataaaatacagaaaatatatacatatagtacTCTGCAGAGGTTTTAGACACATaagcacattatttaaaaaaactaataaaaaagaggaaaagagaacaaaaaaaaaaacttgtttttagATTTCTCCTGGTTGCCCAAAGCCCTCCAGCTCATCTGatttaatatcattaaacaTTGACCCAGGCAGGAACATAGaacaaaaatgaaagtaaatgaaAGGAAcgagggaagaaaaaaacaaaaggtgAGTGCAAGAAGTTTGTAAACTCTCAGGAGACAGGAACTCTATGGCTTTTGtgtttgagaaaattaaaaggtgtcaaaaaaaaggaatgagcgatgaaaaaacaacaaaaagataaTTTCAAGTCAGTATAACTGTGCATTAGATGTCAGAGGCCTGCCCTGAAGGAGTGCATGCAATTTGGTGGATGTCAAGCAAATGAAACTCTAGGACGAAAATGAAAAGGAATGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44742 lncRNA upstream 8294 240157 ~ 270391 (-) True G33272
TU44747 lncRNA upstream 43187 275050 ~ 275410 (-) False G33277
TU44749 lncRNA upstream 43187 275050 ~ 276680 (-) False G33277
TU44750 lncRNA upstream 43187 275050 ~ 276680 (-) True G33277
TU44761 lncRNA upstream 122337 354200 ~ 354841 (-) True G33286
XM_007251310.3 mRNA downstream 117257 101240 ~ 109740 (-) True LOC103039609
XM_022668843.1 mRNA downstream 130827 72134 ~ 96170 (-) False LOC103039921
XM_022668842.1 mRNA downstream 130827 72134 ~ 96170 (-) True LOC103039921
XM_007251147.3 mRNA downstream 189519 21446 ~ 37478 (-) True pank1
XM_022668840.1 mRNA downstream 207177 918 ~ 19820 (-) True slc16a12
XM_022668845.1 mRNA upstream 56127 287990 ~ 299000 (-) False ppp1r3c
XM_007251142.3 mRNA upstream 56127 287990 ~ 292577 (-) True ppp1r3c
XM_022668849.1 mRNA upstream 74493 306356 ~ 337153 (-) False LOC103038678
XM_022668848.1 mRNA upstream 74493 306356 ~ 337153 (-) False LOC103038678
XM_022668846.1 mRNA upstream 74493 306356 ~ 337153 (-) True LOC103038678
TU44781 other upstream 157606 389469 ~ 401312 (-) True LOC111192416
TU44782 other upstream 157606 389469 ~ 401312 (-) False LOC111192416
TU44793 other upstream 157606 389469 ~ 401312 (-) False LOC111192416
trnaq-cug other upstream 893602 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 894532 1126395 ~ 1126467 (-) True trnar-ccu

Expression Profile