RNA id: TU44742


Basic Information

Item Value
RNA id TU44742
length 358
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G33272
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 240157 ~ 270391 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgatGGACCCAAGAAAACGACTTTAGTATTAGTGCAACAACAATAACCACACTCTTCATTCACTCGAAAGCAGctcacagttttttaaatgGACCTGCTGCCGCTGTTTCCCCAACAACACGTAGACGAGAAGACTACATTGTGGGGGACCTTAAACCTGAAAGCAGCTTGTTGACTGGTTTGCAGCCATCCAGATATGTGCCCACAAGAAAGCAGATTCTCAGCATCAGTGTGCTCCTGAAAAATCTGGACCAGAATCTCAAAGGTGTGTTTCCAGTATATTGTGGAATGTGTGCCACAAAGAAGCTGTTCTGAGAGCAAAGCTGTACGGGGTAGACAGAACCAGGCCATGCAGCA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44739 lncRNA downstream 8294 226997 ~ 231863 (-) True G33270
TU44747 lncRNA upstream 4659 275050 ~ 275410 (-) False G33277
TU44749 lncRNA upstream 4659 275050 ~ 276680 (-) False G33277
TU44750 lncRNA upstream 4659 275050 ~ 276680 (-) True G33277
TU44761 lncRNA upstream 83809 354200 ~ 354841 (-) True G33286
TU44772 lncRNA upstream 99336 369727 ~ 372765 (-) False G33289
XM_007251310.3 mRNA downstream 130417 101240 ~ 109740 (-) True LOC103039609
XM_022668843.1 mRNA downstream 143987 72134 ~ 96170 (-) False LOC103039921
XM_022668842.1 mRNA downstream 143987 72134 ~ 96170 (-) True LOC103039921
XM_007251147.3 mRNA downstream 202679 21446 ~ 37478 (-) True pank1
XM_022668839.1 mRNA downstream 223615 1476 ~ 16542 (-) False slc16a12
XM_022668845.1 mRNA upstream 17599 287990 ~ 299000 (-) False ppp1r3c
XM_007251142.3 mRNA upstream 17599 287990 ~ 292577 (-) True ppp1r3c
XM_022668849.1 mRNA upstream 35965 306356 ~ 337153 (-) False LOC103038678
XM_022668848.1 mRNA upstream 35965 306356 ~ 337153 (-) False LOC103038678
XM_022668846.1 mRNA upstream 35965 306356 ~ 337153 (-) True LOC103038678
TU44781 other upstream 119078 389469 ~ 401312 (-) True LOC111192416
TU44782 other upstream 119078 389469 ~ 401312 (-) False LOC111192416
TU44793 other upstream 119078 389469 ~ 401312 (-) False LOC111192416
trnaq-cug other upstream 855074 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 856004 1126395 ~ 1126467 (-) True trnar-ccu

Expression Profile