RNA id: TU44761


Basic Information

Item Value
RNA id TU44761
length 642
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G33286
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 354200 ~ 354841 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tattattattattattattattattatacgaaaacaaataaatgagtgaAGATTAACATTGTTAAACTGTTTGTCTGAAAGAAATTAGTATCACAGCAAGGGTTGTCAGACATTTCTGGTACGTATGTACAGGTGAGCACATAAGTGGGAAAGAGGGAATGCACTTTTTTATGTgtgaatgtatttaatatattgtataatcaGTTCTATGTTGTtttgtcagaaaaaaaatgtgaactgGGAAAAAAATTGTCACTTACAATTTGTAAGGAAGATTGTCAGAATATAGACTGAAACCTAGTACACAGGTTGAGATACATTAGATGACATTTTTTCATAGAATTTCTGTGATAATTCAGTGCAAAAGAAATTTGTGACAGGCAGTATgtctttatttgtctttttaaatgtctttataCGATGTTATGATTTAATGTTGCCTAGACTGGATCTAGACAGGATTTTAGTGGGTTCTCACTTTCCTTGACTGAACAATAAAACCCATTGTAACATGACATGAAAGCTGTATTAAATGTGTGAAAGGTGGAGGAGTGTCAAATGTAAACCTACATTTTATACTCCAGTTTGTTTTTGGATGAGATGAGTTTAAGTGTGAATAAATTATGAATACCTAAAGAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44749 lncRNA downstream 77520 275050 ~ 276680 (-) False G33277
TU44750 lncRNA downstream 77520 275050 ~ 276680 (-) True G33277
TU44747 lncRNA downstream 78790 275050 ~ 275410 (-) False G33277
TU44742 lncRNA downstream 83809 240157 ~ 270391 (-) True G33272
TU44739 lncRNA downstream 122337 226997 ~ 231863 (-) True G33270
TU44772 lncRNA upstream 14886 369727 ~ 372765 (-) False G33289
TU44774 lncRNA upstream 14886 369727 ~ 372765 (-) True G33289
TU44776 lncRNA upstream 15532 370373 ~ 373316 (-) False G33290
TU44777 lncRNA upstream 15532 370373 ~ 374146 (-) True G33290
TU44783 lncRNA upstream 41266 396107 ~ 401312 (-) False LOC111192416
XM_022668849.1 mRNA downstream 17047 306356 ~ 337153 (-) False LOC103038678
XM_022668848.1 mRNA downstream 17047 306356 ~ 337153 (-) False LOC103038678
XM_022668846.1 mRNA downstream 17047 306356 ~ 337153 (-) True LOC103038678
XM_022668847.1 mRNA downstream 17047 307345 ~ 337153 (-) False LOC103038678
XM_022668845.1 mRNA downstream 55200 287990 ~ 299000 (-) False ppp1r3c
XM_022668851.1 mRNA upstream 809 355650 ~ 365154 (-) False LOC103038367
XM_007251307.3 mRNA upstream 809 355650 ~ 365154 (-) True LOC103038367
XM_022669426.1 mRNA upstream 34593 389434 ~ 400990 (-) False LOC111192416
XM_022668853.1 mRNA upstream 54573 409414 ~ 418452 (-) True LOC111192339
XM_007234065.2 mRNA upstream 85713 440554 ~ 448541 (-) False znf281
TU44781 other upstream 34628 389469 ~ 401312 (-) True LOC111192416
TU44782 other upstream 34628 389469 ~ 401312 (-) False LOC111192416
TU44793 other upstream 34628 389469 ~ 401312 (-) False LOC111192416
trnaq-cug other upstream 770624 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 771554 1126395 ~ 1126467 (-) True trnar-ccu

Expression Profile