RNA id: TU44774


Basic Information

Item Value
RNA id TU44774
length 881
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G33289
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 369727 ~ 372765 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

actacaactactgaaACCCCTACAACTACTGAAACCCCTACAACCACTACAACTACTGAAACCCCTACAACCACTACAACTACTGAAACCCCTACAACCACTACAACTACTGAAACCCCTACAACCACTACAACCACTGAAACCCCTACAACCACTGAAACCCCTACAACCACTACAACTACTGAAACCCCTACAACCACTACAACTACTGAAACCCCTACAACCACTACAACTACTGAAACCCCTACAACCACTACAACTACTGAAACccctacaactactacaaccactgaaacccctacaactactgaaacccctacaactactacaactactgaaacccctacaactactacaaccactgaaacccctacaactactacaactactgaaacccctacaactactacaaccactgaaacccctacaaccactacaactactgaaacccctacaactactacaactactgaaACCCCTACAACCACTACAACCACTGAAACCCCTACAACCACTACAACCACTGAAACCCCTACAACCACTACAACTACTGAAACCCCTACAACCACTACAACTACTGAAACCCCTACAACCACTACAACTACTGAAACCCCTACAACCACTACAACTACTGAAACCCCTACAACCACTACAACTACTGAAACCCCTACAACCACTACAACCACTGAAACCCCTAcaactactacaactactgaaACCCCTACAACCACTACAACTACTGAAACCCCTACAACCACTACAACTACTGAAACCCCTACAACCACTACAACCACTGAAACccctacaactactacaaccaCTGAAACCACTACAACTACTGAAACCCCTACAACCACTacaaccactactactactgaaaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44761 lncRNA downstream 14886 354200 ~ 354841 (-) True G33286
TU44749 lncRNA downstream 93047 275050 ~ 276680 (-) False G33277
TU44750 lncRNA downstream 93047 275050 ~ 276680 (-) True G33277
TU44747 lncRNA downstream 94317 275050 ~ 275410 (-) False G33277
TU44742 lncRNA downstream 99336 240157 ~ 270391 (-) True G33272
TU44783 lncRNA upstream 23342 396107 ~ 401312 (-) False LOC111192416
TU44794 lncRNA upstream 24508 397273 ~ 401312 (-) False LOC111192416
TU44796 lncRNA upstream 45748 418513 ~ 469639 (-) False G33296
TU44800 lncRNA upstream 45748 418513 ~ 423388 (-) True G33296
TU44808 lncRNA upstream 45748 418513 ~ 419626 (-) False G33296
XM_022668851.1 mRNA downstream 4573 355650 ~ 365154 (-) False LOC103038367
XM_007251307.3 mRNA downstream 4573 355650 ~ 365154 (-) True LOC103038367
XM_022668848.1 mRNA downstream 32574 306356 ~ 337153 (-) False LOC103038678
XM_022669426.1 mRNA upstream 16669 389434 ~ 400990 (-) False LOC111192416
XM_022668853.1 mRNA upstream 36649 409414 ~ 418452 (-) True LOC111192339
XM_007234065.2 mRNA upstream 67789 440554 ~ 448541 (-) False znf281
XM_022668850.1 mRNA upstream 67789 440554 ~ 448317 (-) True znf281
XM_022668856.1 mRNA upstream 194121 566886 ~ 667790 (-) False LOC103046197
TU44781 other upstream 16704 389469 ~ 401312 (-) True LOC111192416
TU44782 other upstream 16704 389469 ~ 401312 (-) False LOC111192416
TU44793 other upstream 16704 389469 ~ 401312 (-) False LOC111192416
trnaq-cug other upstream 752700 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 753630 1126395 ~ 1126467 (-) True trnar-ccu

Expression Profile