RNA id: TU44800


Basic Information

Item Value
RNA id TU44800
length 1736
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G33296
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 418513 ~ 469639 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAACTGACACAACTGAAGCCACTACCATAGCCTCTACTGATTCAACTGACACAACTGAAGCCTCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAGCCTCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAGCCACTACCATAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAGCCTCTACTGATTCAACTGACACAACTGAAGCCTCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAGCCACTACCGAAGCCTCTACTGATTCAACTGACACAACTGACACAACTGAAGCCTCTACTGACACAACTGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACTGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAAGCCTCTACTGACACAACTGACACAACTGAAGCCTCTACTGATTCAACTGACACAACTGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACTGAAGCCTCTACTGATTCAACTGACACAACTGAACCCCCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAGCCACTACCATAGCCTCTACCGATTCAACTGACACAACTGAAGCCTCTACTGATTCAACTGACACAACTGAAGTCTCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAAGGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACGGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAAGCCTCTACTGATTCAACTGAAACCCCTACGGAAGCCTCTACTGATTCAACTGACACAACTGAAGCCTCTACTGATTCAACTGACACAACTGAAGTCTCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAGCCTCTACTGATTCACTGACACAACTGAAACCCCTACCGAAGCCTCTACTTGATTCAACTGACAACAACTGAAACCCCTACCGAAGCCTCTACTTGATTCAACTGACACAACTGAAGTCTCTACGAAGCCTCTACTGATTCAACGACACAACTGAAACCCCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAAGCCTCTACTGATTCAACTGACACAACTGAAACCCCTACCGAAGCCTCTACTGATCCTACTGATACAACTGAAGCCACTACTGATTCAACTGACACAACTGACACAACTGAAGCCCCTACCGTAGTCTCTACTGATCCTACTGACACAACTGAAGCCCCTACCGTAGTCTCTACTGATTCTACTGACACAACTGAAGCCCCTACCGTAGTCTCTACTGATCATACTGACACAACTGAAGCCTCTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44783 lncRNA downstream 17201 396107 ~ 401312 (-) False LOC111192416
TU44794 lncRNA downstream 17201 397273 ~ 401312 (-) False LOC111192416
TU44777 lncRNA downstream 44367 370373 ~ 374146 (-) True G33290
TU44776 lncRNA downstream 45197 370373 ~ 373316 (-) False G33290
TU44774 lncRNA downstream 45748 369727 ~ 372765 (-) True G33289
TU44938 lncRNA upstream 182361 605749 ~ 609512 (-) False G33389
TU44943 lncRNA upstream 182361 605749 ~ 610141 (-) False G33389
TU44944 lncRNA upstream 182361 605749 ~ 610141 (-) True G33389
TU44934 lncRNA upstream 185019 608407 ~ 610663 (-) False G33389
TU44937 lncRNA upstream 185019 608407 ~ 612068 (-) False G33389
XM_022668853.1 mRNA downstream 61 409414 ~ 418452 (-) True LOC111192339
XM_022669426.1 mRNA downstream 17523 389434 ~ 400990 (-) False LOC111192416
XM_022668851.1 mRNA downstream 53359 355650 ~ 365154 (-) False LOC103038367
XM_007251307.3 mRNA downstream 53359 355650 ~ 365154 (-) True LOC103038367
XM_022668847.1 mRNA downstream 81360 307345 ~ 337153 (-) False LOC103038678
XM_007234065.2 mRNA upstream 17166 440554 ~ 448541 (-) False znf281
XM_022668850.1 mRNA upstream 17166 440554 ~ 448317 (-) True znf281
XM_022668856.1 mRNA upstream 143498 566886 ~ 667790 (-) False LOC103046197
XM_022668854.1 mRNA upstream 143498 566886 ~ 667789 (-) True LOC103046197
XM_022668855.1 mRNA upstream 143498 566886 ~ 643689 (-) False LOC103046197
TU44781 other downstream 17201 389469 ~ 401312 (-) True LOC111192416
trnaq-cug other upstream 702077 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 703007 1126395 ~ 1126467 (-) True trnar-ccu
TU45334 other upstream 1387198 1810586 ~ 1812622 (-) True G33675
XR_002649841.1 other upstream 1599353 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 1611706 2035094 ~ 2042274 (-) False LOC103022010

Expression Profile