RNA id: TU44996


Basic Information

Item Value
RNA id TU44996
length 2815
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G33426
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 912388 ~ 921558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgggccatagatgataattggctaggatgaccttgatagcttgtatggttctagagaaacagctatcgagcattggccccgccccctgggggggtgtatgtctacttaaactgacagggtatctgagaatcatgtaatgatcaaaggactgaagtggtattagtgtcaggttaagcattcaaaagttataagtgttaaagacattttactgcaccatggtagaactcatttgcatatggcggccatattgtttataaatgtaaagatttttttaataattattgaggagtaagctctgctgaactgtttgacaccaaacatgtcatgattggtcaaggatccaaggacaagatctcaaaagtaggttttgcatattatgcaaattaaaaaaaaaattaagtgggtggagcataaacaagaatgacccaggcggctgaccagcatgaacaagaaggataaatatgttcaattaagcaagacaagcaagattgaataagttcagcagagctttaatttagaataattcacctgtagctgtttcaccaaatgaccaccagagcgcagcaagagaccacatataacctgctggaaatctatcactctatcagaaagacagaacattccctatcagtgtgtttctatttattaaaaagagaagaaaagtccgattgggctccaaattggtactcatgatcaagtggtctgtatatacatgtatgtaaatttgtgtgttgatagggtcaaaggttcctgtcttctgtccatttaggttggaaaatagcgataaatagaataaattgaaaatagttattttttcactgtagagcctactgaagacttatttggctcatacttggcacatgtacttcaaatgtcattgttaattagtagcttcaacagttttggcatgttttaaactttgacagagttttggccaaataactctgaaaaggctttcacgtacatgtttgatcaaggtttatgggcctcaaatagttaaaatgtcaagatttttttgataattatttacctacagggtctcaagattgcatcaagaccaaatttgttttgattgattaaggacttaaagacaagttcgaaaagagcaatttttactcttttggccactgatgaaaatctttgcatttttggtaaacatatgtaattacaaagttgtaaaggctacagcaaagtatacaactaaaaaagaataacaagcctaggccacttgtacctttagatataactgattttctgctatagcgcccccttgaggccaatcaacgccatattttaatggatgatagaaggccctgagatacatgtagggtataagtatcgtcctgattggtcattgtttagcctgtcaaaagcttgctggaatctgattggctaataacgatcgcaaaaatttgcatatcaaattttccttctgtaaaacattaggacataggccatagatgatacatgccaaaggagagcttcatagcttgtacggttcctgagaaacagatttttagctttggctccgccccctgggggcgtatgtctacacagattgacgggctacctcagaatcatgttggcatcaaagttgtaaaggctacagcaaagtatacaactaaaaaagaataacaagcctaggccacttgtacctttagatataactgattttctgctatagcgcccccttgaggccaatcaacgccatattttaatggatgatagaaggccctgagatacatgtagggtataagtatcgtcctgattggtcattgtttagcctgtcaaaagcttgctggaatctgattggctaataacgatcgcaaaaatttgcatatcaaattttccttctgtaaaacattaggacataggccatagatgatacatgccaaaggagagcttcatagcttgtacggttcctgagaaacagatttttagctttggctccgccccctgggggcgtatgtctacacagattgacgggctacctcagaatcatgttggcatcaaagttgtaaaggctacagcaaagtatacaactaaaaaagaataacaagcctaggccacttgtacctttagatataactgattttctgctatagcgcccccttgaggccaatcaacgccatattttaatggatgatagaaggccctgagatacatgtagggtataagtatcgtcctgattggtcattgtttagcctgtcaaaagcttgctggaatctgattggctaataacgatcgcaaaaatttgcatatcaaattttccttctgtaaaacattaggacataggccatagatgatacatgccaaaggagagcttcatagcttgtacggttcctgagaaacagatttttagctttggctccgccccctgggggcgtatgtctacacagattgacgggctacctcagaatcatgttggcatcaaagttgtaaaggctacagcaaagtatacaactaaaaaagaataacaagcctaggccacttgtacctttagatataactgattttctgctatagcgcccccttgaggccaatcgggctcatcttttgaatctgagtagcggtgagaagtactaccatatgaccaagtctcagccctgtaggccttacggtttcttctgcccaatcacttctatggcagaaaaagaataagaataataataataataataataataataataataataataataatcagaacaattacaatagggtttctagcactacgtgctcgaacccctaataataataataataataataataataataatcagaacaattacaatagggtttctagcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44861 lncRNA upstream 300277 608543 ~ 612111 (+) False G33329
TU44855 lncRNA upstream 300426 606044 ~ 611962 (+) False G33329
TU44853 lncRNA upstream 301564 606044 ~ 610824 (+) True G33329
TU45036 lncRNA downstream 67362 988920 ~ 989676 (+) True G33454
TU45037 lncRNA downstream 67362 988920 ~ 991094 (+) False G33454
TU45046 lncRNA downstream 70759 992317 ~ 992518 (+) True trnal-aag
TU45056 lncRNA downstream 117484 1039042 ~ 1046002 (+) False LOC111192341
XR_002649835.1 lncRNA downstream 121018 1042576 ~ 1046503 (+) True LOC111192341
XM_007234080.3 mRNA upstream 62126 838305 ~ 850262 (+) True LOC103022594
XM_007234073.2 mRNA upstream 157392 752588 ~ 754996 (+) True LOC103047415
XM_007234074.3 mRNA upstream 167245 735828 ~ 745143 (+) False acbd4
XM_007234094.3 mRNA downstream 49078 970636 ~ 973482 (+) True LOC103026642
XM_007234085.3 mRNA downstream 61609 983167 ~ 985381 (+) True LOC103023950
XM_007257192.3 mRNA downstream 193030 1114588 ~ 1120630 (+) True LOC103037439
XM_015607862.2 mRNA downstream 208397 1129955 ~ 1138168 (+) True wdr45b
XM_007257194.3 mRNA downstream 208406 1129964 ~ 1138168 (+) False wdr45b
trnac-gca_9 other upstream 30950 881367 ~ 881438 (+) True trnac-gca_9
TU44688 other upstream 487984 419010 ~ 424404 (+) False LOC111192417
TU44555 other upstream 767026 128385 ~ 145362 (+) False LOC103039306
TU45029 other downstream 61633 983191 ~ 985372 (+) False LOC103023950
trnal-aag other downstream 70754 992312 ~ 992393 (+) False trnal-aag
trnar-ucg other downstream 199838 1121396 ~ 1121468 (+) True trnar-ucg
trnam-cau_18 other downstream 200243 1121801 ~ 1121872 (+) True trnam-cau_18
TU45181 other downstream 447644 1369202 ~ 1388019 (+) True LOC111192342

Expression Profile