RNA id: XM_007234085.3


Basic Information

Item Value
RNA id XM_007234085.3
length 467
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC103023950
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 983167 ~ 985381 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAAACCGGCAGTGGCTAGCTTCACAAAGTTAGGTTAGCTcattagctagcaagctaggtCACAAACCTCAAATACAGCAGTCATGTCGACGGCGATGAACTTTGGAAACAAGACTTTTAAACCTCGGCCGCCTGATAAAGGCTCTTTCCCCTTAGATCATTTCGGTGATTGTAAATCGTTTAAAGAGAAGTTCATGCGCTGCCTCAGCGACAACAACTTCGACAACTCGCTGTGTCGCATTCAGTCTAAAGAGTACCTGGAGTGTAGAATGGAGAGGCAGCTGATGGCCAAGGAGCCTTTGGAAAAGCTGGGCTTCAAGGATTTGATGGACCAGCCCCAGGCACAAAACAAGGAAGCAAACCCTTAgaaaaagctaattaaaaagATCATTGTCTTTCCACTGCATTAGGTTATTTAAATTGTAAACTTTATGTAAATGATGTACATATAAAAGTGTTTGATATAA

Function

GO: NA

KEGG:

id description
K18183 COX19; cytochrome c oxidase assembly protein subunit 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44981 lncRNA upstream 38698 858648 ~ 944469 (+) True G33413
TU44996 lncRNA upstream 61609 912388 ~ 921558 (+) True G33426
TU44861 lncRNA upstream 371056 608543 ~ 612111 (+) False G33329
TU44857 lncRNA upstream 373033 606044 ~ 610134 (+) False G33329
TU45036 lncRNA downstream 3539 988920 ~ 989676 (+) True G33454
TU45037 lncRNA downstream 3539 988920 ~ 991094 (+) False G33454
TU45046 lncRNA downstream 6936 992317 ~ 992518 (+) True trnal-aag
TU45056 lncRNA downstream 53661 1039042 ~ 1046002 (+) False LOC111192341
XR_002649835.1 lncRNA downstream 57195 1042576 ~ 1046503 (+) True LOC111192341
XM_007234094.3 mRNA upstream 9685 970636 ~ 973482 (+) True LOC103026642
XM_007234080.3 mRNA upstream 132905 838305 ~ 850262 (+) True LOC103022594
XM_007234073.2 mRNA upstream 228171 752588 ~ 754996 (+) True LOC103047415
XM_007234074.3 mRNA upstream 238024 735828 ~ 745143 (+) False acbd4
XM_007257192.3 mRNA downstream 129207 1114588 ~ 1120630 (+) True LOC103037439
XM_015607862.2 mRNA downstream 144574 1129955 ~ 1138168 (+) True wdr45b
XM_007257194.3 mRNA downstream 144583 1129964 ~ 1138168 (+) False wdr45b
XM_007257196.3 mRNA downstream 153058 1138439 ~ 1156171 (+) True foxk2
XM_007257195.3 mRNA downstream 153111 1138492 ~ 1156171 (+) False foxk2
trnac-gca_9 other upstream 101729 881367 ~ 881438 (+) True trnac-gca_9
TU44688 other upstream 558763 419010 ~ 424404 (+) False LOC111192417
TU44555 other upstream 837805 128385 ~ 145362 (+) False LOC103039306
trnal-aag other downstream 6931 992312 ~ 992393 (+) False trnal-aag
trnar-ucg other downstream 136015 1121396 ~ 1121468 (+) True trnar-ucg
trnam-cau_18 other downstream 136420 1121801 ~ 1121872 (+) True trnam-cau_18
TU45181 other downstream 383821 1369202 ~ 1388019 (+) True LOC111192342
trnaq-cug_1 other downstream 852124 1837505 ~ 1837576 (+) True trnaq-cug_1

Expression Profile