RNA id: TU45037


Basic Information

Item Value
RNA id TU45037
length 489
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G33454
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 988920 ~ 991094 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAAGAGTAAAAGATCAAAgtgattttaatataaaaagaaatcatAACATACTTAGATCGGGAGTGTCGCCGGTTGTCATGTCGACGCCGGCTGGGACTGGGAGAGCCAGATGAGCTTGAGGAACTAGAGGAGCGTGAGCTGGAGGAGCCAGAGCGGCTGGAAGCAGAGGATGAACTGGAGCCACTCGATGAGCCAGAGCTGGAACCAGaactgctgctggagctggagCTACTGCTGCCACTAGATGCGTTCCGTCGTTTGCGGGCCTTCTCTCTGCCCCTCTCCTTTTCAGCATTCTCTTTAACTCCTGCTTTGTCCTTCCCTCGTTCTTTTGGTTTTTCCTCAGAGCGGTCCTTTCTCTTGGTTGGAGATGGAGCCATTTTTACCCGTTTTTATCGCTCGTCGCACTTTACATGACGTATCACAACACGGCCCCCCCAACGTACGTCATGGCAGAAGAGGTATCGGTCCCCAAAGATAAAAGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44981 lncRNA upstream 44451 858648 ~ 944469 (+) True G33413
TU44996 lncRNA upstream 67362 912388 ~ 921558 (+) True G33426
TU44861 lncRNA upstream 376809 608543 ~ 612111 (+) False G33329
TU44857 lncRNA upstream 378786 606044 ~ 610134 (+) False G33329
TU45046 lncRNA downstream 1223 992317 ~ 992518 (+) True trnal-aag
TU45056 lncRNA downstream 47948 1039042 ~ 1046002 (+) False LOC111192341
XR_002649835.1 lncRNA downstream 51482 1042576 ~ 1046503 (+) True LOC111192341
TU45100 lncRNA downstream 193971 1185065 ~ 1221130 (+) True LOC111192399
XR_002649899.1 lncRNA downstream 193988 1185082 ~ 1220976 (+) False LOC111192399
XM_007234085.3 mRNA upstream 3539 983167 ~ 985381 (+) True LOC103023950
XM_007234094.3 mRNA upstream 15438 970636 ~ 973482 (+) True LOC103026642
XM_007234080.3 mRNA upstream 138658 838305 ~ 850262 (+) True LOC103022594
XM_007234073.2 mRNA upstream 233924 752588 ~ 754996 (+) True LOC103047415
XM_007234076.3 mRNA upstream 243777 735880 ~ 745143 (+) False acbd4
XM_007257192.3 mRNA downstream 123494 1114588 ~ 1120630 (+) True LOC103037439
XM_015607862.2 mRNA downstream 138861 1129955 ~ 1138168 (+) True wdr45b
XM_007257194.3 mRNA downstream 138870 1129964 ~ 1138168 (+) False wdr45b
XM_007257196.3 mRNA downstream 147345 1138439 ~ 1156171 (+) True foxk2
XM_007257195.3 mRNA downstream 147398 1138492 ~ 1156171 (+) False foxk2
TU45029 other upstream 3548 983191 ~ 985372 (+) False LOC103023950
trnac-gca_9 other upstream 107482 881367 ~ 881438 (+) True trnac-gca_9
TU44688 other upstream 564516 419010 ~ 424404 (+) False LOC111192417
TU44555 other upstream 843558 128385 ~ 145362 (+) False LOC103039306
trnal-aag other downstream 1218 992312 ~ 992393 (+) False trnal-aag
trnar-ucg other downstream 130302 1121396 ~ 1121468 (+) True trnar-ucg
trnam-cau_18 other downstream 130707 1121801 ~ 1121872 (+) True trnam-cau_18
TU45181 other downstream 378108 1369202 ~ 1388019 (+) True LOC111192342
trnaq-cug_1 other downstream 846411 1837505 ~ 1837576 (+) True trnaq-cug_1

Expression Profile