Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU45100 |
| length | 954 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 4 |
| gene id | LOC111192399 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035900.1 |
| NCBI id | CM008303.1 |
| chromosome length | 25652880 |
| location | 1185065 ~ 1221130 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_002649835.1 | lncRNA | upstream | 138562 | 1042576 ~ 1046503 (+) | True | LOC111192341 |
| TU45056 | lncRNA | upstream | 139063 | 1039042 ~ 1046002 (+) | False | LOC111192341 |
| TU45046 | lncRNA | upstream | 192547 | 992317 ~ 992518 (+) | True | trnal-aag |
| TU45037 | lncRNA | upstream | 193971 | 988920 ~ 991094 (+) | False | G33454 |
| TU45036 | lncRNA | upstream | 195389 | 988920 ~ 989676 (+) | True | G33454 |
| TU45114 | lncRNA | downstream | 122280 | 1343410 ~ 1344921 (+) | True | G33511 |
| XR_002649836.1 | lncRNA | downstream | 148043 | 1369173 ~ 1384218 (+) | False | LOC111192342 |
| TU45182 | lncRNA | downstream | 148072 | 1369202 ~ 1383801 (+) | False | LOC111192342 |
| XR_002649838.1 | lncRNA | downstream | 326545 | 1547675 ~ 1557290 (+) | False | LOC111192343 |
| XR_002649837.1 | lncRNA | downstream | 326545 | 1547675 ~ 1557290 (+) | False | LOC111192343 |
| XM_007257196.3 | mRNA | upstream | 28894 | 1138439 ~ 1156171 (+) | True | foxk2 |
| XM_007257195.3 | mRNA | upstream | 28894 | 1138492 ~ 1156171 (+) | False | foxk2 |
| XM_015607862.2 | mRNA | upstream | 46897 | 1129955 ~ 1138168 (+) | True | wdr45b |
| XM_007257194.3 | mRNA | upstream | 46897 | 1129964 ~ 1138168 (+) | False | wdr45b |
| XM_007257192.3 | mRNA | upstream | 64435 | 1114588 ~ 1120630 (+) | True | LOC103037439 |
| XM_015607858.2 | mRNA | downstream | 39520 | 1260650 ~ 1366518 (+) | False | LOC103039538 |
| XM_015607861.2 | mRNA | downstream | 39521 | 1260651 ~ 1366518 (+) | True | LOC103039538 |
| XM_015607855.2 | mRNA | downstream | 39521 | 1260651 ~ 1366518 (+) | False | LOC103039538 |
| XM_015607856.2 | mRNA | downstream | 39521 | 1260651 ~ 1366518 (+) | False | LOC103039538 |
| XM_015607857.2 | mRNA | downstream | 39521 | 1260651 ~ 1366518 (+) | False | LOC103039538 |
| trnam-cau_18 | other | upstream | 63193 | 1121801 ~ 1121872 (+) | True | trnam-cau_18 |
| trnar-ucg | other | upstream | 63597 | 1121396 ~ 1121468 (+) | True | trnar-ucg |
| trnal-aag | other | upstream | 192672 | 992312 ~ 992393 (+) | False | trnal-aag |
| TU45029 | other | upstream | 199693 | 983191 ~ 985372 (+) | False | LOC103023950 |
| trnac-gca_9 | other | upstream | 303627 | 881367 ~ 881438 (+) | True | trnac-gca_9 |
| TU45181 | other | downstream | 148072 | 1369202 ~ 1388019 (+) | True | LOC111192342 |
| trnaq-cug_1 | other | downstream | 616375 | 1837505 ~ 1837576 (+) | True | trnaq-cug_1 |
| TU45414 | other | downstream | 829668 | 2050798 ~ 2056874 (+) | True | amz2 |
| TU46176 | other | downstream | 2949921 | 4171051 ~ 4178083 (+) | False | G34309 |
| XR_002649861.1 | other | downstream | 5398540 | 6619670 ~ 6663587 (+) | False | LOC103029551 |
