RNA id: XR_002649899.1


Basic Information

Item Value
RNA id XR_002649899.1
length 783
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id LOC111192399
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1185065 ~ 1221130 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAATCTCTGAGCCCTGGAACAGCACGCGCCTGTGGCAGCAATAAACAGACGGAGtggttgtgtggagaaaaaCAACAGATTTGGTGCCCTCGTTTTGGATCACCTGAACCCCCCCTGCACCAGCGATTTCCCCTTAGCCCACTCAAGGCTACAAAGCTGGGTGGCCCGCGTGCTGCCAGTCCCTAAGGGACACAGGTGCTGACACAGTGCTAGCAGTCACTGACCTGGACCAAGAAAGGCCAGAGGATGGAGATGAGGGAGGGAACAAGTGGCTCAGAAATAGCTAACATGCTTGACAAGGGACAAGATGTCTAATATGTTTCCAGTCTGCTCCCCGGCTCCGCCGCTCCCACGCCTGCTGGAGAAAGCAGTGTGATGGAATTCTAAGCACTCCAAAACACTCCTGCGAGTATAGTTTATTGCCGGCGTACTGCTCCAGGACAGGCTGGAAATCATTATTTACTCCTCAAGGCCATTCCACAAGATTGAGCTTTAGAGGTTTAGGTATTTGTTCATATTACGTTTTCTGTATGCCTGTGTAGTGAGCCCCCAACCCCCCCTCACCTCCCTCGCAACTTGTTGTCACCCCTGGTTTTATTTGCTGTGGGAGTTGTAAAGCACTGAATGTCAGTTGATATCTTTCACTATAGCATGCCATGACttttcctgcggagactgatgGAGCGAGTCAGTGATGCTCAGCTCAAAGTTGCTTCGTCCTTTAACCTCTTAAACTGCAgactaataaaaatgaatgctcCTAACTCATTCAAGAAAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649835.1 lncRNA upstream 138579 1042576 ~ 1046503 (+) True LOC111192341
TU45056 lncRNA upstream 139080 1039042 ~ 1046002 (+) False LOC111192341
TU45046 lncRNA upstream 192564 992317 ~ 992518 (+) True trnal-aag
TU45037 lncRNA upstream 193988 988920 ~ 991094 (+) False G33454
TU45036 lncRNA upstream 195406 988920 ~ 989676 (+) True G33454
TU45114 lncRNA downstream 122434 1343410 ~ 1344921 (+) True G33511
XR_002649836.1 lncRNA downstream 148197 1369173 ~ 1384218 (+) False LOC111192342
TU45182 lncRNA downstream 148226 1369202 ~ 1383801 (+) False LOC111192342
XR_002649838.1 lncRNA downstream 326699 1547675 ~ 1557290 (+) False LOC111192343
XR_002649837.1 lncRNA downstream 326699 1547675 ~ 1557290 (+) False LOC111192343
XM_007257196.3 mRNA upstream 28911 1138439 ~ 1156171 (+) True foxk2
XM_007257195.3 mRNA upstream 28911 1138492 ~ 1156171 (+) False foxk2
XM_015607862.2 mRNA upstream 46914 1129955 ~ 1138168 (+) True wdr45b
XM_007257194.3 mRNA upstream 46914 1129964 ~ 1138168 (+) False wdr45b
XM_007257192.3 mRNA upstream 64452 1114588 ~ 1120630 (+) True LOC103037439
XM_015607858.2 mRNA downstream 39674 1260650 ~ 1366518 (+) False LOC103039538
XM_015607861.2 mRNA downstream 39675 1260651 ~ 1366518 (+) True LOC103039538
XM_015607855.2 mRNA downstream 39675 1260651 ~ 1366518 (+) False LOC103039538
XM_015607856.2 mRNA downstream 39675 1260651 ~ 1366518 (+) False LOC103039538
XM_015607857.2 mRNA downstream 39675 1260651 ~ 1366518 (+) False LOC103039538
trnam-cau_18 other upstream 63210 1121801 ~ 1121872 (+) True trnam-cau_18
trnar-ucg other upstream 63614 1121396 ~ 1121468 (+) True trnar-ucg
trnal-aag other upstream 192689 992312 ~ 992393 (+) False trnal-aag
TU45029 other upstream 199710 983191 ~ 985372 (+) False LOC103023950
trnac-gca_9 other upstream 303644 881367 ~ 881438 (+) True trnac-gca_9
TU45181 other downstream 148226 1369202 ~ 1388019 (+) True LOC111192342
trnaq-cug_1 other downstream 616529 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45414 other downstream 829822 2050798 ~ 2056874 (+) True amz2
TU46176 other downstream 2950075 4171051 ~ 4178083 (+) False G34309
XR_002649861.1 other downstream 5398694 6619670 ~ 6663587 (+) False LOC103029551

Expression Profile