RNA id: TU45181


Basic Information

Item Value
RNA id TU45181
length 2838
RNA type TUCP
GC content 0.42
exon number 5
gene id LOC111192342
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1369173 ~ 1388019 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGAAACACATACAGCTGGCCTGACTCACACTGCACTGTACTTCAGAGCGCGTTTTTGTGGCTAAAAAGTGAGAAATTAAGCAGTAAACGAGTTAAAAAGTAACTGAAGGAACTTTTTGAAGGAGCACGTTATTGTTTTTGCTCAGTGGACTAATTTCGGACCCTCACCGGAGCACGAGGACGCCGCAGCTGATTAGAACCGGAGCAGGGCCACGCCCGCCAGTGTCCATTTGGATGGATTCTCTTTGGTCTTCAGGTTGAACGTCCACACGTATGTGGGCCCCCTCTGTCTGGTCTTGTAGACGGGACACTGATACACGTTCCGCGTCTCCTGCTTGTCAACAGAGGGACATGGCAACAGTGGAGGAACATGCTCTCCAGATGCTCTACGAGGATCGGAAGAGGACTGATGCCAGGATCATTGTCTCCGGCCCCATTCCCACCTAGCGCTACAGGAGCGAGCTGGACGTCGCACTGCAGGCTCATCTTATCCAGGGGCCACTCGTTGCGGCGGGCTGTGGACTGCATGATGGCGGTCAGGAAGGACTGTGGGTTGAAGAAGCCGGCCAACCAGACGGCCGGGGGCAGGTTGAAGTCTGAGCTCCAGCTCTCCAGCTCACGGATTCGGTTCAGCAGGTCGGTGAACCACAGCGCCAGACCGCACATGGACGGGTATGCCCGCTTCGTCCAAGAGTCCGGTACCTGATCCAGTACCTTCAGGCCCAAATTGAGCTCTTTAAGAGAGCGTTTGATCTCCTGTGTGAGAATGTTCATACGCTCACACTCCTGCAGGGCCACCACTACATATGGACTCCTCTCCTCCACTTTCCCCATCAGCTCCACCATGTTAAACTCCTCTGGAAGCTTCTCCAGGGTCTCTTCCAGAACCGCTTTCaccttaaacacacaaatatatcaGTGAACATGGATCCTAAACATCATTTACACAGTGGAAAGTATAAGTTAAGTGAgaactgttccttactattgatTCAGGTACTGGGAAACTTATTGAAGCTAGATATTCATTTTGGATTGTAAAACTAATCTGTCAAAATATGATGGGAAAAACACAATATTCTGGTAGCATGTTAGCTCAAGGCTCATAAACATTTTCAGGATTGGATCATTTCTTGGCCCTTGGAGATGGGAGATTTACATTTAAAGCTTGTAATAGAAATGTTTGTTTTCACGAAGTATCTTTGCTTTAATAGGACAAACCACCACATcttcaaatgaaaaatattaaagcaTGACTACAAAATGTGAGAATTATATGAGAATAAGGCCATTctacaatattatattaaaatatagccTTTTTGTTATcatgatttttgttttctttaatgaaACCCTAATCTCTGAAAACAAAAGAATTCTCTGGCAGGTGCAGAGGCAAAACAATGTGACCAACACTGTAAATTTGTCTCACCAGCTGCTGTAATCACAGCTATGTGTTGAGTACCTTGTTCTCATCTGCTTGTGAGGTAGCTAGCAGTAGGTTGTAGCCAGCTCTCTCAGAGACAATATATACCAAAGACTATTATAAATTGAATCAACTGTACATACTGTTAACAAAACACAGttcatatataatttatatataatgttttttttttttttcgttttttttttttttacagtagccATACCAAGCTAGAACAGTACTGAGCCAAACACTACAAACTGTGCATAAagatttatcagattttatcatTTTGATTTTGAATTTTGGGGTTTGGTGGCATGTCTCGTATGACATTGGGTAACTGTCTGGTCACATTGTAAAGAGGCCACCTAAAGACTTTTGCTATACCAACCAGTTTTTTCATTACGTTAGCTATATTAGCCTCTCAATGCTCTTAAGAAGCAGCAAATTTCTCCATTCTCCATTGACTGATCCGATATGTTTAGGATAAAGTGTAAACGTACTGTTCTCATAAACACTCTCCTGTTAGGCACTCTAGAAACACACTTCCTCTTAAATGTCCCCTAAAAACAGTTGAACTTTACACAATCATGAACTCCACAGAGACAAAACACTACAAGGGCGAAGTCCACGTAATCAATATcccgcagaaaaaaaaaatatctatttgtCTCGGTCACTTACATGACCAGCGTAATGCAAAGTGGTCATTGCTTACAAATCCCAATCTCTTAACTGAAAAAGGTCAGCTGTCATAATGCTTCCAGGCACACTTCCACAGCTCCCATATCTAATCTCTGAAATGTCAGATCCACCCAGCCCAACCCGCTGCTGTGGAATTAGCTCCATTTAACCTCTTCAGACACAAGTGGGCCTTCCAGTCTCAGGCTTAGGATCTGACAGTGTGATTAGGCTGACCCTTTTAAAAGCAGCCACAGTGAAGGACGATATAGGGATCGAGTTCACGTCTATTCTGTCCGATGATGAGGGTAATGGGGCTAAATAGAGGCCCTGACATACAGTGATGATGATGTATTATGAGTAATGGTTGATAATAGGTAGGGAACGCAATCAGGAAATGAGATGGAAGGAAATGACTGCTGAACTGTGTTGTGGTGAGGTGTGCTGATTAATTCCTACTATTTACTatgtgtgtttacctgtgttctGGATAAGGTTCAAGCAAACATTCTTCCAAAAAagcccaaaaataaataaaaattgaaaatgaTTTGGATTAGCTGTAGATGTAGGACTGGTTCAGTAgggacatttatttatttacagtcctTTATAAGATCACCACAAGGTTCCaggacttttattattaaaagattCTCAATATCATCTATTTCCATATACCTAGTTACTCAGTGTACTATTAAACATCTTTCTGTAAAGccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45114 lncRNA upstream 24281 1343410 ~ 1344921 (+) True G33511
TU45100 lncRNA upstream 148072 1185065 ~ 1221130 (+) True LOC111192399
XR_002649899.1 lncRNA upstream 148226 1185082 ~ 1220976 (+) False LOC111192399
XR_002649835.1 lncRNA upstream 322699 1042576 ~ 1046503 (+) True LOC111192341
TU45056 lncRNA upstream 323200 1039042 ~ 1046002 (+) False LOC111192341
XR_002649838.1 lncRNA downstream 159656 1547675 ~ 1557290 (+) False LOC111192343
XR_002649837.1 lncRNA downstream 159656 1547675 ~ 1557290 (+) False LOC111192343
TU45232 lncRNA downstream 161090 1549109 ~ 1551147 (+) True LOC111192343
TU45243 lncRNA downstream 340102 1728121 ~ 1731958 (+) True G33609
TU45246 lncRNA downstream 344907 1732926 ~ 1735977 (+) True G33611
XM_015607858.2 mRNA upstream 2684 1260650 ~ 1366518 (+) False LOC103039538
XM_015607861.2 mRNA upstream 2684 1260651 ~ 1366518 (+) True LOC103039538
XM_015607855.2 mRNA upstream 2684 1260651 ~ 1366518 (+) False LOC103039538
XM_015607856.2 mRNA upstream 2684 1260651 ~ 1366518 (+) False LOC103039538
XM_015607857.2 mRNA upstream 2684 1260651 ~ 1366518 (+) False LOC103039538
XM_022668869.1 mRNA downstream 210921 1598940 ~ 1721902 (+) True myocd
XM_022668873.1 mRNA downstream 210921 1598940 ~ 1721902 (+) False myocd
XM_022668874.1 mRNA downstream 210921 1598940 ~ 1721902 (+) False myocd
XM_022668876.1 mRNA downstream 210921 1598940 ~ 1721902 (+) False myocd
XM_022668871.1 mRNA downstream 210921 1598940 ~ 1721902 (+) False myocd
trnam-cau_18 other upstream 247330 1121801 ~ 1121872 (+) True trnam-cau_18
trnar-ucg other upstream 247734 1121396 ~ 1121468 (+) True trnar-ucg
trnal-aag other upstream 376809 992312 ~ 992393 (+) False trnal-aag
TU45029 other upstream 383830 983191 ~ 985372 (+) False LOC103023950
trnac-gca_9 other upstream 487764 881367 ~ 881438 (+) True trnac-gca_9
trnaq-cug_1 other downstream 449486 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45414 other downstream 662779 2050798 ~ 2056874 (+) True amz2
TU46176 other downstream 2783032 4171051 ~ 4178083 (+) False G34309
XR_002649861.1 other downstream 5231651 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 5231652 6619671 ~ 6661251 (+) False LOC103029551

Expression Profile