RNA id: TU45232


Basic Information

Item Value
RNA id TU45232
length 606
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id LOC111192343
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1547675 ~ 1557290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACAGTAATCTTATCATTACACCTCAATCTCAGGTGCGACAGCACCTGTGTTAGGACTTGAGTTTGAATCTGTTTTGGAACCTATGTTCGGACCTGTTGGACCTGTGTTTGGACTTGTGTTCGGACCTGTATTTAGACCTGAGTTTGGGCCTGTGTTTAGACCTGAGTTCGAGCCTGTGTTTAGACCTGAGTTCGGGCCTGTGTTAAGACCTGTGTTTAGACCTGTGTTTGTACCTGTTTTTATGGAGGTGAAAGGCATGAAGGAAGCTTTGGAgcggaaaagagaaaaaaaagtgtccgAGAGATGGAGCTCGCGCGTTGTTTGCAGTTCAAAGAGGGACGTGACCTCTGGCTGAGCATGGAAGGCCGCGGTTCTAGGGAGCGTGCAGGCGGTTCAGGAACCGAGGAGATTCGGGCCTTGGCTTTGAAGATTAGCATGACAGACCAAAGGCAGCCATCGAGGTCAGTCTTTCCATTTGCAAATCAAAGCCATCCTGCCACAGTGATGGGAGCGTGCTGTTAGTAACGTCTCGCGGGGTGGCTATCCGGAAGCTTACATCTGTCTCCAGCATTGAAGTTATTTACATGATATGATACCAATTTTTG

Function

GO: NA

KEGG:

id description
ko03015 mRNA surveillance pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649836.1 lncRNA upstream 164891 1369173 ~ 1384218 (+) False LOC111192342
TU45182 lncRNA upstream 165308 1369202 ~ 1383801 (+) False LOC111192342
TU45114 lncRNA upstream 204188 1343410 ~ 1344921 (+) True G33511
TU45100 lncRNA upstream 327979 1185065 ~ 1221130 (+) True LOC111192399
XR_002649899.1 lncRNA upstream 328133 1185082 ~ 1220976 (+) False LOC111192399
TU45243 lncRNA downstream 176974 1728121 ~ 1731958 (+) True G33609
TU45246 lncRNA downstream 181779 1732926 ~ 1735977 (+) True G33611
TU45245 lncRNA downstream 183893 1735040 ~ 1735977 (+) False G33611
TU45265 lncRNA downstream 317783 1868930 ~ 1871903 (+) True G33623
TU45408 lncRNA downstream 477186 2028333 ~ 2030101 (+) True G33737
XM_015607856.2 mRNA upstream 182591 1260651 ~ 1366518 (+) False LOC103039538
XM_022668869.1 mRNA downstream 47793 1598940 ~ 1721902 (+) True myocd
XM_022668873.1 mRNA downstream 47793 1598940 ~ 1721902 (+) False myocd
XM_022668874.1 mRNA downstream 47793 1598940 ~ 1721902 (+) False myocd
XM_022668876.1 mRNA downstream 47793 1598940 ~ 1721902 (+) False myocd
XM_022668871.1 mRNA downstream 47793 1598940 ~ 1721902 (+) False myocd
TU45181 other upstream 161090 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 427237 1121801 ~ 1121872 (+) True trnam-cau_18
trnar-ucg other upstream 427641 1121396 ~ 1121468 (+) True trnar-ucg
trnal-aag other upstream 556716 992312 ~ 992393 (+) False trnal-aag
TU45029 other upstream 563737 983191 ~ 985372 (+) False LOC103023950
trnaq-cug_1 other downstream 286358 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45414 other downstream 499651 2050798 ~ 2056874 (+) True amz2
TU46176 other downstream 2619904 4171051 ~ 4178083 (+) False G34309
XR_002649861.1 other downstream 5068523 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 5068524 6619671 ~ 6661251 (+) False LOC103029551

Expression Profile