RNA id: TU45243


Basic Information

Item Value
RNA id TU45243
length 2571
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G33609
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1728121 ~ 1731958 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaacatattttcCCACTCTTAATAGTGATACAATGTAATGATACATATCACCCATATCATATTTTCCcttctaaatattaaatattctacTCATTTGTAACGTACACTATTTACCTTTTGAAAAGTTGCTTTTAATATTggggaaatgtatttattatggtACCCACACACAAAGTATTTAGAGTTTAACCATAACTAGGTCTTACAGATACTAGATaatatctttttacatttttctatttaggtaccaaaaaaatacaataataaaaaaaaaaaacggtattGTCATTCAAATCTGGCAGCATCATGTTATAATTTTGTCAAATCAGTTGCTGAAAGGCTGCTTTGGCAAAGTTCCATGTTTCTCTTTCAAAGCTAGTAACCCAAACCGTGACTTCTGGACACTGATCACTGACATTCCATACAGTCAACATGCCATGCTGTGACTGCTGAGAACATGCCAATTTCAGCAAAAGAGGCAGACTCTATGAAGCAGCAAATACAAAGCTACTTctgaaaacaacaaaacaaaggaTTTTTGCAGAGGAATCTGTAATTTTCTAAAGTTATATAGTAagttttatacacatttacaaTTGTGTAGAAGTGTCCTGCAGGCTCTATTTAAGTGTTCACTACACCAGAAGGACTTTTTCCTTAAATGCAGTGAATACAATTTGGTGAGTTAAAAttgcatatttataaaataaagctactttaaaaggatagcttgattttttttatctagacAACATGGTTCACTTTCCTGGAAATCTAGTGATTGAGATGGAGTCTAACAGATCAATTCCAACAGACAATCAATCATCCTCTCCTTTCCATTCCCACATCAATGGCACCTGCATATGGCAGAAATCATATGGCTGAAATGTTGGAATTCTACAAAACTGGTAAACTCCCAAACACCCTAAACAATCAACAGATATCCAATTATGTGGAGCAAAAGGTCTAGAGTTAAGTTTCCAACCATCCTTTTAACAAATTCTTTTATGCTAAACAATACTTCTgcatattcattcatttcatcaCAATGTGAGATCACAactaatgtgttttatttatctgtACAAGTATTGACGTAAATGACCACCACATTACAGAAATGATTACTTTTAGCATTGCAGGTCAAAATGTCTGTTACTGTGAATAGTTAAGCGGTAAAGTTAAAAGCAACACGTTTTGCAATATAGAGATCTGAAGACCTCTCTGGTGacaatgtgtaattgcacagagcatgtgaaAGTGTGTTCCGACATGATATATCACGCAGTGGTCTATTTGCATTAAACAGCACCTAATACagattaatgtaaataatttgctatgtgaaataattataaaagaaatgtaaaaacaatgtttggtAAGATCAGCAATTAATCTTTATTATTTTGCACAACTTTGTTGTGGGAAAAGAAGCCTAAGGATTCAGTGGACTCTGGAGGGGTGGGGCACTATTCTACGGCGCACCTGCACAAATATAACCATCATAGTCCTCACAGTGTCCTAACCTGATCATCATCAATACTCTGTAGACAAACTTCAGGAGAGTAATGCATGGAAGACGAGCCGAGTCTCACCAAACTCTTCTTTTTACCAGGAAGAATGAgtgaaaaaaagttacttttaccTACTTGCTTAGCTTCTATTCACAGTAACACATTTTGACCACAAGTTTGGGTTTTCCAAACTTCAGCATGCATGTTTATATATCTCAAAAGTTTGGAACACCAGTCAAATTACCTGTGTCGATTTTCTAAGTGTAACTTTTTTGTGTGGTTGATACATTAAGCAAATTATCTATCAAAATGCACTGTGCAAATGTAATGTCACATTAAACATCTCCTTTTTTATATGTTCAATTCAGAAAGATAACAGGAAAGAGGCATTGTGGAAATATCGAAAACGTGCAGAGGAATgccatttctgtttgtttcttgtGTGGAAAATCAACAAAATTAATCTGAacagtgcccaaacttttgcataagATAGCTGTTCGTTATATTGATGCTCAAAAAACGCTAACTTATTGTTTTGGTATGTTTTGCATGTTATATTACAcctacccacacacactcatttatacCCCGTGAACACGAAGAGAAGCTCTgctttgattaattaattgtgTCTTGAATGAAAATGTTCAAGTTTTGTGTCCTTAATTCTAAAACAAGCTCAGCTAAAGTTTACATAtggcattaaaataaatatgatacaTCAGATAAAATAACCACCATGTTCTAGTCTGAACGGAGTTGGCTTGTTTTTAGTCGACCGATACACACTAACGGCTTGAAGATGAAAGCCCGTCCTTATTGCACAAAATGTTTTGGGATTTTTGAGTGTCATGtcttaaaagcagtgtgtaaccATGATCAAGAAACAATGCACCAAATGGTTGCCATGTTACACTGCATTGCATACAGATACCATACAGGCGCTCAGTCGATGTACATAGGAGAGCTTGGGGAAGCGGGGATTTCATCCAGAATTTTACACACATAACTGGCAACATCCACCACTCGCTCTTCATACATCTGAATGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649838.1 lncRNA upstream 170831 1547675 ~ 1557290 (+) False LOC111192343
XR_002649837.1 lncRNA upstream 170831 1547675 ~ 1557290 (+) False LOC111192343
TU45232 lncRNA upstream 176974 1549109 ~ 1551147 (+) True LOC111192343
XR_002649836.1 lncRNA upstream 343903 1369173 ~ 1384218 (+) False LOC111192342
TU45182 lncRNA upstream 344320 1369202 ~ 1383801 (+) False LOC111192342
TU45246 lncRNA downstream 968 1732926 ~ 1735977 (+) True G33611
TU45245 lncRNA downstream 3082 1735040 ~ 1735977 (+) False G33611
TU45265 lncRNA downstream 136972 1868930 ~ 1871903 (+) True G33623
TU45408 lncRNA downstream 296375 2028333 ~ 2030101 (+) True G33737
TU45430 lncRNA downstream 353685 2085643 ~ 2087531 (+) True G33747
XM_022668869.1 mRNA upstream 6219 1598940 ~ 1721902 (+) True myocd
XM_022668873.1 mRNA upstream 6219 1598940 ~ 1721902 (+) False myocd
XM_022668874.1 mRNA upstream 6219 1598940 ~ 1721902 (+) False myocd
XM_022668876.1 mRNA upstream 6219 1598940 ~ 1721902 (+) False myocd
XM_022668871.1 mRNA upstream 6219 1598940 ~ 1721902 (+) False myocd
XM_022668879.1 mRNA downstream 27650 1759608 ~ 1782752 (+) True LOC103043447
XM_015607842.2 mRNA downstream 27651 1759609 ~ 1782752 (+) False LOC103043447
XM_022668880.1 mRNA downstream 52480 1784438 ~ 1799673 (+) True LOC111192346
XM_022668881.1 mRNA downstream 75053 1807011 ~ 1814034 (+) False LOC103043879
XM_007259075.3 mRNA downstream 75072 1807030 ~ 1814314 (+) True LOC103043879
TU45181 other upstream 340102 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 606249 1121801 ~ 1121872 (+) True trnam-cau_18
trnar-ucg other upstream 606653 1121396 ~ 1121468 (+) True trnar-ucg
trnal-aag other upstream 735728 992312 ~ 992393 (+) False trnal-aag
TU45029 other upstream 742749 983191 ~ 985372 (+) False LOC103023950
trnaq-cug_1 other downstream 105547 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45414 other downstream 318840 2050798 ~ 2056874 (+) True amz2
TU46176 other downstream 2439093 4171051 ~ 4178083 (+) False G34309
XR_002649861.1 other downstream 4887712 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 4887713 6619671 ~ 6661251 (+) False LOC103029551

Expression Profile