RNA id: TU45265


Basic Information

Item Value
RNA id TU45265
length 2950
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G33623
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1868930 ~ 1871903 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcACACTACCATATCTGTTTTAAAGTGCAATGTTTTAGAGAAGCAAAAGAAACCACAGATAACTGGGTAATATATTAGGATATATACACTGTTTCATTTGCTTGGCTTCCATCAGTCATAAGAAAAGTACAAAAGAATCAGATCAGTCCCCAGAGACTATCCTCAACTATACATTCAAATCAGCATAgaaaaatacagacaaaattGTCTTCAGTTCTCTTCAGCTGTCAACAGGCAAACAAGTAGGACACAAGTTTCTGCAGTGTAGACTGATGGAGTCACCGCTGGGTACGAGTACAcatcaaagtacattttaacagAATAACAATTTGACGATAGGCACACGTTGCAGTTTAAGTGCAGTTACTGAATAAGGTGGGACACAGTTTAAATcgaacaacaaaaacaaagtgCTACAAAGTGCTGCATTactctatattactctatatatttacattgttgttGGAAACTGTGTGATATGTATTTTAATAGCAAGACATGGAAAACAGTGGATGAACACCTCATACTTGTACATTTTACTATCTCTGACATCACACTGATAGTGGAATGTCATTAATCTGAAACTATTCAGGATGGTGCATGGAGAGTAAGGACATTGTTCTCTAAACACTTTAATAGAGTAATTGGGTAACACTGACACTATCTCCCATATAACAAGCTTTTACAAATAGAAATgtgtgaattaaaataatttaaggtGAGTATTATGTAAATTTATGCATTTGGCTTGATGCTAACTCTTCACAAatGCCTGATTTTCTTTCTGTTCCAACTCAGTTtttcaattaaaacaaattgtATTTTAACCATAGAAACAATCAATGCAGTGGGATAAGTTACTGTAAGATTATTTGTTCATAAATGGCACCACTTTTCAGTAATTGTCAATCATGTAAACTTAAAGACTCCTAAGTTCTTACAGAAGTAAATTATGTACTTTActgtagtgtttagtgttttttatgttagtattaaaaaataagtagtTCTACTTCAGAACGGTTTGTGTGAGAAGCTTTACTGTCATGGTAACGATAGCTGTGTCCAAAACTGTGGCCTATTTACATCACTAACCTCCACCAGACCAGATCCAGTGAAAGATTTTGGGAAACATTGCACCTAAAAACAGGCTAAGTGTCTCCCTCAGAGTAGCTGTATCCAAACCTTCAGGccaaaagagaagagaatacCCACTTCTAGGAGAATGTGTTCTAGTAAGtaagtccaaaatgaatgggtttgTATGGAGCATTTGAGCAAATCAGTTTAGTAATTGTaacttttatcccattttctctctgattctctcactgccaattacccaacccactcagtaGGAatcccccccatcactagtgatgccccaacaccagtgATGCccaagactagcacatgccttctccaacacatgtgaaatcagccaccgcctcttttcaaactgcttctaatgcagcattgcagagtactGATGCAGCCCcaaggaaagcgcagtgactcggttctgatacatcagctcacagacgccttgtgctgatcgacatcaccctttggagtgatgaggagaaagagcgccatctacccacccagagagagagagcaaggccaattgtgctctctcggggctctgatggcaagctgcatgaacaggattcgaaccagcaatctcctgattatGGTGGCAaggcttagcctgctggaccactcggagcccccaAAATGTTTGACATTTTTTATACTTAACAAATGCACTTGTTTAATGGAATAATATCAAATGTGTCAGAAGTGCGGACATCATTTTTAAACTTTCTCACTTCAAACAAGCCTTTTTTGTCCAAAAATTGGatataatgtaaatactttattgtactttctaaaattatagaaaaataagCAGACACTATTTTCAATTTAAGTTAATCCATTTAGCTCCTTTCATCCCCATTCACTCAATTCTTACTTGTGGACTCTCTCTAGAATTTTGCAGTCTTTTCTGATATAACAGTGGAAATAAGAAGTGGGCATACTCTCTGTAAAATGGCTCCTGGACTGTTTGTTTACTCTATATTAAAACGCACTGTCGCGATTGTCACAGTATGCTAAATTTCAGCATCTAATCTCAGACACAGCTACAAAATGGAAGAACAAAATGTTTTGATTAGTGCACTATATGGGTAATAGGGCAAAGATTCAGACTCAGCTAATACACCATTACACTAATATTCCATTGGGTATGCACAGCACATAATAATGTTCCTGTATACACCTGAAGCTTCATATCaattaaaacacactgaatcatTCACACTGAATCACTTTGGTCTCCCACAGTCAGTCTAAATGTGTACATTGAGGCCACATTAtgcttaaaaatattatatatagataaataaaatagtattgAACTTACCAGTATTTAGATAAGTAGCAGTACTATTAGAGTGCAACTTTTATTATCTCTTCTACTTCCACTGTAATCACTGTTACAGGCTTTGAAGACTAAAACTATGTTGTTAAATAGAGAAGTCCTCCTCAGCGGACACAACACAACAGTGCAAGTTAAAGACAGCATGAATAATTAATCTCCATGCTGAGGTTGCTTCCTGTGCTAATTATGAATCTACTTTGAAATGTTAACGAATGCCATGCAGTAGAGTGAATTACGTCAAAACATTCCAACATAGTGCATTTGATCAAATTCTCACGTACCACCAACTCTCTCCAACTCTTCCTCTCACACCATCTTCACTCCTCCCCAAGTCTCAGTACAGTATTAGAACTCCAGTTCCCAGCTTCTGAAAAAGCCTTTTGCAACCACTGCCTCTTTAAAAGTAACCGTCAGCGAATTGATGGTGACATCTGTCACAGTTACATCTTCTGGACCTAACACTGGCCTCCATTCCTTACATGCTTTTGGAGTTATTGAATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45246 lncRNA upstream 132953 1732926 ~ 1735977 (+) True G33611
TU45245 lncRNA upstream 132953 1735040 ~ 1735977 (+) False G33611
TU45243 lncRNA upstream 136972 1728121 ~ 1731958 (+) True G33609
XR_002649838.1 lncRNA upstream 311640 1547675 ~ 1557290 (+) False LOC111192343
XR_002649837.1 lncRNA upstream 311640 1547675 ~ 1557290 (+) False LOC111192343
TU45408 lncRNA downstream 156430 2028333 ~ 2030101 (+) True G33737
TU45430 lncRNA downstream 213740 2085643 ~ 2087531 (+) True G33747
TU45432 lncRNA downstream 216056 2087959 ~ 2088160 (+) True G33748
TU45440 lncRNA downstream 245664 2117567 ~ 2119530 (+) True G33754
TU45482 lncRNA downstream 251984 2123887 ~ 2124173 (+) True G33788
XM_015608365.2 mRNA upstream 279 1846203 ~ 1868651 (+) False LOC103044365
XM_022668888.1 mRNA upstream 279 1846203 ~ 1868651 (+) False LOC103044365
XM_015608367.2 mRNA upstream 279 1846203 ~ 1868651 (+) False LOC103044365
XM_007259079.3 mRNA upstream 279 1846203 ~ 1868651 (+) False LOC103044365
XM_015608364.2 mRNA upstream 279 1846204 ~ 1868651 (+) True LOC103044365
XM_007259085.3 mRNA downstream 33130 1905033 ~ 1909731 (+) True LOC103046730
XM_007259086.3 mRNA downstream 58265 1930168 ~ 1967340 (+) True LOC103047034
XM_007259093.3 mRNA downstream 171662 2043565 ~ 2049789 (+) True LOC103022306
XM_007259097.2 mRNA downstream 178839 2050742 ~ 2056963 (+) False amz2
XM_007259096.2 mRNA downstream 178839 2050742 ~ 2056963 (+) False amz2
trnaq-cug_1 other upstream 31354 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 480911 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 747058 1121801 ~ 1121872 (+) True trnam-cau_18
trnar-ucg other upstream 747462 1121396 ~ 1121468 (+) True trnar-ucg
trnal-aag other upstream 876537 992312 ~ 992393 (+) False trnal-aag
TU45414 other downstream 178895 2050798 ~ 2056874 (+) True amz2
TU46176 other downstream 2299148 4171051 ~ 4178083 (+) False G34309
XR_002649861.1 other downstream 4747767 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 4747768 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 4859051 6730954 ~ 6731424 (+) True G34931

Expression Profile