RNA id: TU45334


Basic Information

Item Value
RNA id TU45334
length 553
RNA type TUCP
GC content 0.46
exon number 5
gene id G33675
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1810586 ~ 1812622 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCTCAATAAGCTGAGTTCTCTTGGCTCCAAGGTTGAACAATTTCTCTGATGTTGGTGAATGAAAGAAGGATATGAGGTCGGGACTGCAGAGGTTTGTCTTTGCTGGGCTTCCCTTATCTTTTCCATTTTCCTTAGTCCCATTAACACAGTTgtgctcttcctcctcctcctcctcctcatcatcctcatcctctGCACCACTatcttcatcatcctcctcctcttcttcatctgGTTCTCCTTCATCATCACTGAGTGAACCAAGCACATCTGACTTGTCCACACTTTCCATAGCCTCTTTGAGAGCTTCACAGCCATACTCCCCCAGGCAGTTTCCATTGAGGTCTAACTTCTTCAAATCAGGTTTGTCCTTTAATGCCCTTGCAAGTACCAACGCTGCAGCTTCAGTAATTTCCCCAAAAGACAGATTTAGCTCCTTAATAACAGTCAATCCTTCTCTTAGGGCTGCCGCTATAGCAATGGCGCCTTCAGTACGTACCAGACAGTCACCAAAATTAACAACCTGAATGCTGCGTAGGTGCTTAAGGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649840.1 lncRNA downstream 83329 1720811 ~ 1727257 (-) True LOC111192345
XR_002649839.1 lncRNA downstream 90140 1718648 ~ 1720446 (-) True LOC111192344
TU45161 lncRNA downstream 635931 1174440 ~ 1174655 (-) True G33545
TU45154 lncRNA downstream 654409 1153432 ~ 1156177 (-) True G33539
TU45016 lncRNA downstream 888940 912388 ~ 921646 (-) True G33441
TU45350 lncRNA upstream 44346 1856968 ~ 1857715 (-) True G33690
TU45353 lncRNA upstream 50164 1862786 ~ 1863512 (-) True G33693
TU45402 lncRNA upstream 163207 1975829 ~ 1976108 (-) True G33731
TU45403 lncRNA upstream 163707 1976329 ~ 1976585 (-) True G33732
TU45446 lncRNA upstream 261713 2074335 ~ 2074606 (-) True G33759
XM_022668878.1 mRNA downstream 57043 1745216 ~ 1753543 (-) False LOC103044468
XM_007257214.3 mRNA downstream 57072 1749204 ~ 1753514 (-) True LOC103043761
XM_015607839.2 mRNA downstream 62543 1745216 ~ 1748043 (-) False LOC103044468
XM_007257217.2 mRNA downstream 62545 1745216 ~ 1748041 (-) True LOC103044468
XM_007257213.3 mRNA downstream 69111 1729023 ~ 1741475 (-) False LOC103042940
XM_022668883.1 mRNA upstream 12867 1825489 ~ 1837284 (-) True LOC103040308
XM_022668882.1 mRNA upstream 12867 1825489 ~ 1836476 (-) False LOC103040308
XM_007259081.3 mRNA upstream 57988 1870610 ~ 1878209 (-) False cbx7
XM_007259080.3 mRNA upstream 57988 1870610 ~ 1878208 (-) True cbx7
XM_022668889.1 mRNA upstream 66636 1879258 ~ 1889279 (-) True josd1
trnar-ccu other downstream 684119 1126395 ~ 1126467 (-) True trnar-ccu
trnaq-cug other downstream 685050 1125465 ~ 1125536 (-) True trnaq-cug
TU44781 other downstream 1409274 389469 ~ 401312 (-) True LOC111192416
XR_002649841.1 other upstream 210119 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 222472 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other upstream 223503 2036125 ~ 2042274 (-) False LOC103022010
TU45542 other upstream 356401 2169023 ~ 2177059 (-) True G33823
TU45557 other upstream 382135 2194757 ~ 2196095 (-) True G33836

Expression Profile