RNA id: TU45408


Basic Information

Item Value
RNA id TU45408
length 1343
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G33737
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2028333 ~ 2030101 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCACCATATACTGTGTGCAAAAAATTACgctacaaaattattaaaaataaatttggtaatgtattattttaaacaatatatacacataacaTGTATAAAGAGCATCATAACATAAAGTGCTTAAGAGAAATGAAGCTTACTTGTAGATCTGCTGAGCTTTCTCTTTCATTGTAGCTGCAGTTCCCCATTTGAGATCTTCACACGCCTCCCAAAATGCAAGGTTTTCACCTATTCATCACCACAGATTCACTCAAACCATTATCCATTTCATAAGCATTTTCTAATCAACAGCTACCAGATTTACTTTagcatttactttaaaatcagCTGTGATGTCAGCAGGTATTCATTATAATTCATGTCTGTTGCACGTCACATACCACTGAACTCTTTCTTTAAGAAGAGGCGGAAATCGTCTCGTCCGCGAGGGTCAGACAGCAGTTCACCAAAGCTGAAAGTCCAGCGCTCCACTCTCATTTTTGTTGGATTTTCAATaTTGCATGTTAAGCTGCCAGTACGTGACATCATCTGTTAACCAGGGGTTGCTGGGAAGGCATGGGTAAAGGAATGGGTCATGCTGCTTGTATGTTGTGCTGTACTTCACAAGtctgtaacaaaaataaatatatttgtacaaaaaggatttatatttatattttacaaaagaaaactaaataacaaaataaaagtagcagctttataaacttaaataaaacaactttgACTTCGACTCATCATGTATTTTTCAATAGAATCGTCCTTAAAGTTAAcccaatataaataaatgttgcatGTTCTGTTGTAGGACATACGCTCCAATGGACACAGATGACTTCACTCTAGGCCTCATGATGCACTGCTGAGTGAAGATTATCTACACCAGgtgaaataaaacataatcaGTTATGAGTGACATCGTTAAATCATCCACAGAATTACTATacgctaaataaaaaaaaaatatcacttacTATCCTTCTGTAGTGGTCAGATGATTGTTTCTGAAATAGAAGAGAAAATTGAAGCTTGTAAAGTAATAAACATATTTCTTTAAATCAATATTGAACAGGCTAACACAGataaccattttttaaatggAACTTATTGTAGAAGTGTCTGAAGTTTCTTcctttttcagttattttcataaaaatgtaaaatactgtaataatgtaaaatactgTACGGTTTGGATCGTTTCTCACACAGCAGTTTTAACCACACAAGCGTCAGACAAAATCTGCAAGAGAGACACAAGACAATCAATCACAGACAGCTCATTTGATCTGATCGGTTTCTCAAAGAACAttataatacactgtaaactACTGTAGCACTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45265 lncRNA upstream 156430 1868930 ~ 1871903 (+) True G33623
TU45246 lncRNA upstream 292356 1732926 ~ 1735977 (+) True G33611
TU45245 lncRNA upstream 292356 1735040 ~ 1735977 (+) False G33611
TU45243 lncRNA upstream 296375 1728121 ~ 1731958 (+) True G33609
XR_002649837.1 lncRNA upstream 471043 1547675 ~ 1557290 (+) False LOC111192343
TU45430 lncRNA downstream 55542 2085643 ~ 2087531 (+) True G33747
TU45432 lncRNA downstream 57858 2087959 ~ 2088160 (+) True G33748
TU45440 lncRNA downstream 87466 2117567 ~ 2119530 (+) True G33754
TU45482 lncRNA downstream 93786 2123887 ~ 2124173 (+) True G33788
TU45491 lncRNA downstream 100573 2130674 ~ 2134078 (+) True G33791
XM_007259086.3 mRNA upstream 60993 1930168 ~ 1967340 (+) True LOC103047034
XM_007259085.3 mRNA upstream 118602 1905033 ~ 1909731 (+) True LOC103046730
XM_015608367.2 mRNA upstream 159682 1846203 ~ 1868651 (+) False LOC103044365
XM_007259093.3 mRNA downstream 13464 2043565 ~ 2049789 (+) True LOC103022306
XM_007259097.2 mRNA downstream 20641 2050742 ~ 2056963 (+) False amz2
XM_007259096.2 mRNA downstream 20641 2050742 ~ 2056963 (+) False amz2
XM_007259098.3 mRNA downstream 20665 2050766 ~ 2056963 (+) False amz2
XM_022668893.1 mRNA downstream 36276 2066377 ~ 2074253 (+) True arsg
trnaq-cug_1 other upstream 190757 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 640314 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 906461 1121801 ~ 1121872 (+) True trnam-cau_18
trnar-ucg other upstream 906865 1121396 ~ 1121468 (+) True trnar-ucg
trnal-aag other upstream 1035940 992312 ~ 992393 (+) False trnal-aag
TU45414 other downstream 20697 2050798 ~ 2056874 (+) True amz2
TU46176 other downstream 2140950 4171051 ~ 4178083 (+) False G34309
XR_002649861.1 other downstream 4589569 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 4589570 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 4700853 6730954 ~ 6731424 (+) True G34931

Expression Profile