RNA id: TU45414


Basic Information

Item Value
RNA id TU45414
length 2649
RNA type TUCP
GC content 0.51
exon number 6
gene id amz2
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2050742 ~ 2056963 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTGTTACAGGCGGAGGGACGGGTTTGAGCGCTTTCTGTGTGTTAAGATCTGTCCGCGGATCAGATTACCGTACACTGACAGATCATAAacctgctactgctgctgcaggtgGATATAGAGGCTGTGAGGTTTGTGAGAAATTGTGAGATATAGCTGTATATAAGTGGGGCAGGATTACTCCAGCGGAGCTGCTGTTATgatgtagtttataaaatataaacagaagCTTTTCCGGGCTGATCTCTGAACTGCTGCATTTACCGGAAACGAGGCTTCGCTTCTGCAACAAATTTCACATCTATCTAAGAAGATGAGCCCGGATAATGCTGAAGATCTCTTCTGCTTGTGATGGAGGTGATCGAGCATCCTGTGGAGAAACTGCGCTCGGCTCTCCGCTCCACCCGTAATGACCTGATCCAAACCTATGGGCAGTACAGCCGAGAGGAGCGGAGATTACTGGAGGAGGGTCTTCTTCCCGGCAGCCCACTGTTCAGTCCCATTACAGTTCACTCTGATTCAGACTGGATTCCTTCACACCCTGAATCACCTCAGGACTTTCAGAGCTTCTACAGCAACCCGTACCGCAGCACGCCAAACAACGGCCATAAGACCATTTACATACAGACAATAGGTCAGACTGACAACCAATTTCTGTACTGATAACTGTTCTTTAACAAGAACCCATGTGAATTGGGGAAAGcttcatagaataaaaaaattttaCACCAGCGCAATGTTTAAGTTTGATGGTCTTTATTTGTAGAATATTAGagcatattgtaaaaaaatatatatacatatcttGGTTTTCAAATACAATTCAGTTTTGTTGTGCTTACATAACCACTGTTAACAAGActgttgtatttatatataaaaaaaatcacccttTCAAACTATTGGttcttttacatttgttttttttttgtccgcAGGCTCTTTTGGAGATGGAGCTGGGATCTCTGAGCAGTATGTGGAGTGGCTGAGGGCCTATTGCCAGGCGTTCTACTATGGCCTGAAGGTTAAGCTCCTTCCGCCGGTGACAGTGGCTTCTACAGGCTGTTCCTTCCGTGTCAACAACAATACACACAACCTTCAGCTTCACGCCGGAGAACTGCTTTCATTTCTGAAAAAGAAGAAGCCCAGAGATGCATTTTGCATTGTGGGAATCACAATGATTGATCTGTAcccaaaagactcttggaattTTGTTTTTGGACAAGCTTCCCTCACTGAAGGAATGGGTGTTTTCAGCTTTGCCCGATATGATGATGACTTCTACAAAAGGAGTTATGCAGGACGGCTGAAGAAAGCAATAAAGCTGAAGCCTGGAGACTACAGTGTATTTCAAGGCTACTACACTCCTCCAATCACCAGCACTTTGCTCTTCCGCTCATACACTGACTCATGAGATTGGACACATATTTGGTGTCAAGCACTGCCTGTGGCTCCAGTGTGTTATGCAGGGCTCCAACCATTTAGAGGAATCGGACCGCCGGCCACCAGACGTCTGTCCCATCTGCCTGAGAAAGCTACAGTCCGCCATTGGCTTTAAGATAGCCGACAGGTACAAGGCTTTACTACTCTGGATCGAGGAAGCACCAAGCAGTTCTGCACAGCATTTGAGTAAACCCACTGAAGCTTTCCAAGACTTCAGGCACTGGTTAAGTAAGTGTCTGAGTATACTGGAAGatgaaatattttaattctGCCACATTTTAACAAAGATGATAATTGGAAGGTAATTATTTGATATCCAGAGGATCTGCTTTGTTtgcctttctttttttgcaCCTTGAATGTACAAACTATTTATGCTATggctttaaaacaaaatacattgttgtaaaaatgaacaaaaaacattGTACTGAAAATgacttaagttattttattttagataaaaatgattgtgtgtgtaaaaaaaagtgattgctCTTACAgacaaaatcacaaaaaaagtttgtttctaTACATACAAAATTCAAGTCAAATAATAATGCCCAGAATAATATGAGAATTATAAAAATGAGAATTAACCTGCTGAAAATGTTGACCTTCACTTCACAGttattgtaaatgctttaaCTTAGACTGACCATCTCATTCTTTTGATTACATTCTGGTAAGTTTTTCATTCACATTCTGACACTTAATATGTAAAGAAATATTCACAGTATATTGACATTTTCACAGTATGTTCCACTGATTTGTCATACAGTATATTCTGCATAATTTAATACTTAATATGCAAATTCACTCACTGACACTCGTGATTTTCTGTACAGTAATAGGAACACATGATCCTTAAGGTAAAATGCCTTCTTAAAGCTTCTCCACTTTCCTAAAGTTTCCTAAAGCCTGAGACATTATTTTATGATAACGTTTGTCTAAAGCACATTCTTAAAATCTCTTTACACtaaaacattatataattttaatatcatatcatataatgCCTTACATTGAGAATTTCTCAACATGAAAGCACTTTCATGCGTTTACCAATATGATGATTTAAAGATTTACAAGCAGTAAATAAATAGTCAGTGTcttgaaaacaataaaattaaaataattggtCCAAAATGTTTACATAAAATGAATGCTGCATTGTATATCAAGCTGGTTTTCATTGTTAAATTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45408 lncRNA upstream 20697 2028333 ~ 2030101 (+) True G33737
TU45265 lncRNA upstream 178895 1868930 ~ 1871903 (+) True G33623
TU45246 lncRNA upstream 314821 1732926 ~ 1735977 (+) True G33611
TU45245 lncRNA upstream 314821 1735040 ~ 1735977 (+) False G33611
TU45243 lncRNA upstream 318840 1728121 ~ 1731958 (+) True G33609
TU45430 lncRNA downstream 28769 2085643 ~ 2087531 (+) True G33747
TU45432 lncRNA downstream 31085 2087959 ~ 2088160 (+) True G33748
TU45440 lncRNA downstream 60693 2117567 ~ 2119530 (+) True G33754
TU45482 lncRNA downstream 67013 2123887 ~ 2124173 (+) True G33788
TU45491 lncRNA downstream 73800 2130674 ~ 2134078 (+) True G33791
XM_007259093.3 mRNA upstream 1009 2043565 ~ 2049789 (+) True LOC103022306
XM_007259086.3 mRNA upstream 83458 1930168 ~ 1967340 (+) True LOC103047034
XM_007259085.3 mRNA upstream 141067 1905033 ~ 1909731 (+) True LOC103046730
XM_015608365.2 mRNA upstream 182147 1846203 ~ 1868651 (+) False LOC103044365
XM_022668888.1 mRNA upstream 182147 1846203 ~ 1868651 (+) False LOC103044365
XM_022668893.1 mRNA downstream 9503 2066377 ~ 2074253 (+) True arsg
XM_022668894.1 mRNA downstream 10363 2067237 ~ 2074253 (+) False arsg
XM_007259105.3 mRNA downstream 31683 2088557 ~ 2097830 (+) True LOC103025124
XM_007259109.3 mRNA downstream 42281 2099155 ~ 2107129 (+) True LOC103026481
XM_007259108.3 mRNA downstream 51597 2108471 ~ 2117195 (+) True calcoco2
trnaq-cug_1 other upstream 213222 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 662779 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 928926 1121801 ~ 1121872 (+) True trnam-cau_18
trnar-ucg other upstream 929330 1121396 ~ 1121468 (+) True trnar-ucg
trnal-aag other upstream 1058405 992312 ~ 992393 (+) False trnal-aag
TU46176 other downstream 2114177 4171051 ~ 4178083 (+) False G34309
XR_002649861.1 other downstream 4562796 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 4562797 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 4674080 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 4845543 6902417 ~ 6903997 (+) True G35021

Expression Profile