RNA id: TU45451



Basic Information


Item Value
RNA id TU45451
length 574
RNA type TUCP
GC content 0.45
exon number 3
gene id LOC103022010
representative False

Chromosome Information


Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2022071 ~ 2042303 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GACAGCCAGCGTCTCGGTGTGTgtatcaataataataagagattAGGCTGGATTAGTAAAACTCCCACGTTCATCCGAGAACCCGCTTCATTCCAGCTCCTCGACGGTGATCTGCAGGCTGCTCCTCCTCTGCTGTGCGGACCACAGACCCAATCATGACCATCAGAAACGTGCGGGATCACGGACAGCGCTACAGACCGCGGATGGCTTGTCTGAAAAAGCTGGAAGCTGTGGTGCTGGAGATGCAAGACCCCAAGACTGGGGTGAAATCTCAGACACAGAGACTGGTCATCACCACCATTCCTCATGCCATAACAGGTGAAGATATTGTTGAATGGATTGCTAATCGCTTCAAAGTCGGTGCTGCTGGTAAGTTGGGTgcattgtttctgtgtgtattcTAGTGCACATTGTCTGTGTTGCATCAACACCTTCTGTATCTctgggaataaaaaaataaatactttgtaCAGTGAAAATACAGCATGATGCAAAACAACCATGTCCTGCCAAAACACGTAAACAAGAAAAGGCAGTTTTtgcaaaaattattattattatatatcaaagtatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45403 lncRNA downstream 59540 1976329 ~ 1976585 (-) True G33732
TU45402 lncRNA downstream 60017 1975829 ~ 1976108 (-) True G33731
TU45353 lncRNA downstream 172613 1862786 ~ 1863512 (-) True G33693
TU45350 lncRNA downstream 178410 1856968 ~ 1857715 (-) True G33690
XR_002649840.1 lncRNA downstream 308868 1720811 ~ 1727257 (-) True LOC111192345
TU45446 lncRNA upstream 32061 2074335 ~ 2074606 (-) True G33759
XR_002649842.1 lncRNA upstream 38701 2080975 ~ 2083243 (-) True LOC111192348
TU45517 lncRNA upstream 85993 2128267 ~ 2130172 (-) True G33804
TU45554 lncRNA upstream 149816 2192090 ~ 2192968 (-) True G33833
TU45556 lncRNA upstream 152013 2194287 ~ 2194607 (-) True G33835
XM_022668891.1 mRNA downstream 1655 2022071 ~ 2034470 (-) False LOC103022010
XM_007259090.3 mRNA downstream 18950 1977614 ~ 2017175 (-) False LOC103047336
XM_007259095.2 mRNA upstream 13826 2056100 ~ 2066246 (-) True LOC103022929
XM_022668896.1 mRNA upstream 13826 2056100 ~ 2063662 (-) False LOC103022929
XM_022668900.1 mRNA upstream 32356 2074630 ~ 2085960 (-) False LOC103023976
XM_022668901.1 mRNA upstream 33413 2075687 ~ 2087567 (-) False LOC103023976
XM_007259099.3 mRNA upstream 33413 2075687 ~ 2087537 (-) True LOC103023976
XR_002649841.1 other downstream 1655 2022741 ~ 2034470 (-) False LOC103022010
TU45334 other downstream 223503 1810586 ~ 1812622 (-) True G33675
trnar-ccu other downstream 909658 1126395 ~ 1126467 (-) True trnar-ccu
trnaq-cug other downstream 910589 1125465 ~ 1125536 (-) True trnaq-cug
TU44793 other downstream 1634813 389469 ~ 401312 (-) False LOC111192416
TU45542 other upstream 126749 2169023 ~ 2177059 (-) True G33823
TU45557 other upstream 152483 2194757 ~ 2196095 (-) True G33836
TU45650 other upstream 260988 2303262 ~ 2309329 (-) True G33904
TU45820 other upstream 1138894 3181168 ~ 3194377 (-) True G34046
TU45985 other upstream 1740851 3783125 ~ 3789192 (-) True prr15l

Expression Profile