RNA id: XM_022668892.1


Basic Information

Item Value
RNA id XM_022668892.1
length 3339
RNA type mRNA
GC content 0.39
exon number 16
gene id LOC103022010
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2022071 ~ 2042303 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGAGCGGCAATGTTCTCTGATTGGTGGAGACAGCCAGCGTCTCGGTGTGTgtatcaataataataagagattAGGCTGGATTAGTAAAACTCCCACGTTCATCCGAGAACCCGCTTCATTCCAGCTCCTCGACGGTGATCTGCAGGCTGCTCCTCCTCTGCTGTGCGGACCACAGACCCAATCATGACCATCAGAAACGTGCGGGATCACGGACAGCGCTACAGACCGCGGATGGCTTGTCTGAAAAAGCTGGAAGCTGTGGTGCTGGAGATGCAAGACCCCAAGACTGGGGTGAAATCTCAGACACAGAGACTGGTCATCACCACCATTCCTCATGCCATAACAGGTGAAGATATTGTTGAATGGATTGCTAATCGCTTCAAAGTCGGTGCTGCTGGTAAGTTGGGTgcattgtttctgtgtgtattcTAtgtttttttgttgttgttattaataaCAACAAGTCTGATCCCATTTCTTTTACAGACACCATATTTCTGGCCTGCACAACAGTGGCCAGTGGAGGACACAGACTACGCAATATATTTGGCAAAGAGgaatatacgtaaaaaagggaTGTTAGAGCTGCATGAACAGGAGCAGTACAATAATCTTCACAAATGGATGAACCACAAGTGGGACTTCATTGTGATGCAGGCCAAAGAACAGTACAGGGCaggaaaagagaggaagaaaccaGACCGAGTGGTGTTTGACTGCCAAGAGAGAGCCTACTGGGTAGTGCACAGACCACCTCCAGGAACGATTAGTGGCATGGACTACGGACTGGAGCGACTTGTAGATCCCAACCTAGAGGAGAAACAATCATCTGACCACTACAGAAGGATAATAATCTTCACTCAGCAGTGCATCATGAGGCCTAGAGTGAAGTCATCTGTGTCCATTGGAGCaCTTGTGAAGTACAGCACAACATACAAGCAGCATGACCCATTCCTTTACCCATGCCTTCCCAGCAACCCCTGGTTAACAGATGATGTCACGTACTGGCAGCTTAACATGCAAAAtATTGAAAATCCAACAAAAATGAGAGTGGAGCGCTGGACTTTCAGCTTTGGTGAACTGCTGTCTGACCCTCGCGGACGAGACGATTTCCGCCTCTTCTTAAAGAAAGAGTTCAGTGGTGAAAACCTTGCATTTTGGGAGGCGTGTGAAGATCTCAAATGGGGAACTGCAGCTACAATGAAAGAGAAAGCTCAGCAGATCTACAAaacGTTCCTGGCTCGCGGAGCTCCTCGCTGGATCAACATTGATGGAAAGACCATGGAGATTACAGTGAAGGGCCTGTCTCACCCTCATCGCTATGTTCTGGATGCTGCGCAGACCCACATCTACATGCTGATGAAAAAGgaCTCATATGGCCGATACCTGAAGTCCCCTGTGTTTAAGGAGACTCAGAAGAAGGCTGTAGTTCCTGAGCCACACAACTTCAGTGATTCCCAGCTGGAGCAGAATGCTAAGAAGAGAAGGCCCAGCCTGAGCCCCATTATCCTGaggcagcaggaggaggagcagaAGGCCAAGCTGGCTGCCAGCGGACCTGTGGACATAACGCAGGTTATGAGCAAACTGGCCCAGAAAAAGGGGACGGAACACAGGACTTAGATATTATAGCATATTATAGCATtggctttatattttattcttctcAGTTAGAGACGGGTACTGCACTGATACCAGCAGAACATTCTGGATCAGATGTTAGAAGAGACAAATATCAAACAGTATCTGATAGCCTCAAATATTGCAGATTTGCTTATAGAGCAAACTAGTGATGGGAGGTTAATctaattaattagattaatcaactgacttttttaatgcagttttcaAAATAGAATAATCAAGATCTTTACAAAGAGAACCTGCCAGAGGGAATCTAAGTAGATTGGCTTATGCTCCTGTAAAGAAGTCTTTTATGTGGCAGCAATTTTCATATCTTGCACTTTTCCTTATGTGAAATATAAGGAAGTTACTGTTTCCCCCTTTTCAGTATAGTGCTGTGTATTGGCTAGAACTTGGCATTAcgataatatttttaaacaggtCTTATGATTTAGTATTCAAATGTTAGAAAACATtttcataatattaaaaaacacactatcatatttataaaatctgaataataggaactgctatctagtgggtgAGGTCAAAATGCAACTCAAAATGAATCACTgtgtttacatgtaaactattaattaaaaatcaatactttgttttaaaaaaaaatctacagtatTACAGAACAGAATATTTTGATACAATACAATAGATTCATATTTTCTTACACagtttagtataaaaaaaaagattttgtctcccttaaaaataaatttaaaataaacaatactttGCTAAtttgaatgctctaaatggtgCTGTTTTTGCTATTATGGCACATCTACAAATAGATGGCAAATGAACAAAAACctgaatagatttttttttcaagtatcACTTATACttgaaaatgattaagattattttttttttacattattgcccagccctagtgCAAAGCATACACAAACACGTCACATGTATTCCAAAAATAGAACAGATGAAGTAACCTGCTAAATACTACGTTAGAATTATTATTGGtttgtttgatttaaaaaaaagcctcaGTTCTGTGAAACGAAACAGCTGGAAGGTTCTGCACttttaagatgtttaaaataacttattttacagcTTATAAGCTTTTTAAAGACGGACAGTATTGTATTATTCATGACATTATCTAATAACtctaagttttggaaaagtgaTGTTGTATAATGTCTAGCTTTAGCTCACATCACCTGATGTTCTATATAGAGTAAATCTAAATGTGTATACTGTAGgttgtaaaatattattttaaaactttctATGTGTAGTAGAATACTGCATATGATTATAAACAAAAGTACTAAAGTGCAAAAAATTACGTTAAAAAATGTGCGCATTGGTTCCACATGAAGCAAATATTTTATATCAGCATATTTGCTGAGCACTTCATTCACATAAATGTTCATGTTGTTTGTATGGATATcatgtacatttttattcattcattatttaaatcattGAATATGTTTTCCATGTCCCCTTTGTCTTTGTTATATTGTCCTgtccatataaaaaaataattgtgagtACATTTGATGTTTTAtcatattatgttatttttgtgCTCATTTTGTGAAACAAAACATTCAGCAAGTGATATCATTGTAAATCACCACCCATTTTTCTGTCCCTTGTATCACAGTGTCTGCtgaatgatgctgtttgttatTCATGTAATAAAGTCAAATCATTCCTGTCAA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K13765 RGS9; regulator of G-protein signaling 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45403 lncRNA downstream 48975 1976329 ~ 1976585 (-) True G33732
TU45402 lncRNA downstream 49452 1975829 ~ 1976108 (-) True G33731
TU45353 lncRNA downstream 162048 1862786 ~ 1863512 (-) True G33693
TU45350 lncRNA downstream 167845 1856968 ~ 1857715 (-) True G33690
XR_002649840.1 lncRNA downstream 298303 1720811 ~ 1727257 (-) True LOC111192345
TU45446 lncRNA upstream 32032 2074335 ~ 2074606 (-) True G33759
XR_002649842.1 lncRNA upstream 38672 2080975 ~ 2083243 (-) True LOC111192348
TU45517 lncRNA upstream 85964 2128267 ~ 2130172 (-) True G33804
TU45554 lncRNA upstream 149787 2192090 ~ 2192968 (-) True G33833
TU45556 lncRNA upstream 151984 2194287 ~ 2194607 (-) True G33835
XM_007259090.3 mRNA downstream 8385 1977614 ~ 2017175 (-) False LOC103047336
XM_007259091.3 mRNA downstream 19442 1977614 ~ 2006118 (-) False LOC103047336
XM_015608382.2 mRNA downstream 29849 1977614 ~ 1995711 (-) False LOC103047336
XM_007259089.2 mRNA downstream 29849 1977614 ~ 1995711 (-) True LOC103047336
XM_007259084.3 mRNA downstream 120931 1898185 ~ 1904629 (-) True xrcc6
XM_007259095.2 mRNA upstream 13797 2056100 ~ 2066246 (-) True LOC103022929
XM_022668896.1 mRNA upstream 13797 2056100 ~ 2063662 (-) False LOC103022929
XM_022668900.1 mRNA upstream 32327 2074630 ~ 2085960 (-) False LOC103023976
XM_022668901.1 mRNA upstream 33384 2075687 ~ 2087567 (-) False LOC103023976
XM_007259099.3 mRNA upstream 33384 2075687 ~ 2087537 (-) True LOC103023976
TU45334 other downstream 212938 1810586 ~ 1812622 (-) True G33675
trnar-ccu other downstream 899093 1126395 ~ 1126467 (-) True trnar-ccu
trnaq-cug other downstream 900024 1125465 ~ 1125536 (-) True trnaq-cug
TU44782 other downstream 1624248 389469 ~ 401312 (-) False LOC111192416
TU45542 other upstream 126720 2169023 ~ 2177059 (-) True G33823
TU45557 other upstream 152454 2194757 ~ 2196095 (-) True G33836
TU45650 other upstream 260959 2303262 ~ 2309329 (-) True G33904
TU45820 other upstream 1138865 3181168 ~ 3194377 (-) True G34046
TU45985 other upstream 1740822 3783125 ~ 3789192 (-) True prr15l

Expression Profile