RNA id: XR_002649841.1


Basic Information

Item Value
RNA id XR_002649841.1
length 1756
RNA type misc_RNA
GC content 0.50
exon number 15
gene id LOC103022010
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2022071 ~ 2042303 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGACACCATATTTCTGGCCTGCACAACAGTGGCCAGTGGAGGACACAGACTACGCAATATATTTGGCAAAGAGgaatatacgtaaaaaagggaTGTTAGAGCTGCATGAACAGGAGCAGTACAATAATCTTCACAAATGGATGAACCACAAGTGGGACTTCATTGTGATGCAGGCCAAAGAACAGTACAGGGCaggaaaagagaggaagaaaccaGACCGAGTGGTGTTTGACTGCCAAGAGAGAGCCTACTGGGTAGTGCACAGACCACCTCCAGGAACGATTAGTGGCATGGACTACGGACTGGAGCGACTTGTAGATCCCAACCTAGAGGAGAAACAATCATCTGACCACTACAGAAGGATAATAATCTTCACTCAGCAGTGCATCATGAGGCCTAGAGTGAAGTCATCTGTGTCCATTGGAGCaCTTGTGAAGTACAGCACAACATACAAGCAGCATGACCCATTCCTTTACCCATGCCTTCCCAGCAACCCCTGGTTAACAGATGATGTCACGTACTGGCAGCTTAACATGCAAAAtATTGAAAATCCAACAAAAATGAGAGTGGAGCGCTGGACTTTCAGCTTTGGTGAACTGCTGTCTGACCCTCGCGGACGAGACGATTTCCGCCTCTTCTTAAAGAAAGAGTTCAGTGGTGAAAACCTTGCATTTTGGGAGGCGTGTGAAGATCTCAAATGGGGAACTGCAGCTACAATGAAAGAGAAAGCTCAGCAGATCTACAAaacGTTCCTGGCTCGCGGAGCTCCTCGCTGGATCAACATTGATGGAAAGACCATGGAGATTACAGTGAAGGGCCTGTCTCACCCTCATCGCTATGTTCTGGATGCTGCGCAGACCCACATCTACATGCTGATGAAAAAGgaCTCATATGGCCGATACCTGAAGTCCCCTGTGTTTAAGGAGACTCAGAAGAAGGCTGTAGTTCCTGAGCCACACAACTTCAGTGATTCCCAGCTGGAGCAGAATGCTAAGAAGAGAAGGCCCAGCCTGAGCCCCATTATCCTGaggcagcaggaggaggagcagaAGGCCAAGCTGGCTGCCAGCGGACCTGTGGACATAACGCAGCTGTGCCGGTTCACTGCCCCTGTGCCCCACTTGGCTGTGTATACAGGCATCTGTGAGAATCAGTCCACTGCCTCACCGGGCCTGATGACACTGCCCAACAGCGCAGCGTGTCCTTCACCCATCAGTGTGGCAATCGACAGCACCCCAGCCTCTGAGAGAAGGTTTGACAGTGGGGGTACTGCCTCCTCCCATTTCCCCTCTATAGCTGAGAGCGCTGAGACGTCTGTGTCAGAGGAGAGCCAGCCACCTCCACCAAAGTCCCGTGTAGCCCTGTCCCTTAGCCGCCTCCTCCGCCGGGGATGCAACGCCCCATCAGTGTTCGCCAGCTTGTCACCGAAATGTGCCGTTACTGCGGGAGGAGGGAGAGTCCAGCCGCTGGGAGAACCTCTCGCACAACCACAGCCCAAGAGGATTGCAAAGTTAGTTAGATACTGAACAACTGCATTCATAATAAATTGATCCATAGGTTTATTATGCAGCTATAAATTGGATGATTTGTATTTTGTGGAGTTCCCCAGGGGTCGATTTTAGGACCAAGTACAATTTAATTCCAAAGGACATGTGACAGCAATATATAAATTGATGATGTGTGTTATTCATAAGTGAGTTTTTTCCAAATTAAAGTGGACATCCCTCCAGAATGCCGCATTTACCCAATTGACt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45403 lncRNA downstream 46156 1976329 ~ 1976585 (-) True G33732
TU45402 lncRNA downstream 46633 1975829 ~ 1976108 (-) True G33731
TU45353 lncRNA downstream 159229 1862786 ~ 1863512 (-) True G33693
TU45350 lncRNA downstream 165026 1856968 ~ 1857715 (-) True G33690
XR_002649840.1 lncRNA downstream 295484 1720811 ~ 1727257 (-) True LOC111192345
TU45446 lncRNA upstream 39865 2074335 ~ 2074606 (-) True G33759
XR_002649842.1 lncRNA upstream 46505 2080975 ~ 2083243 (-) True LOC111192348
TU45517 lncRNA upstream 93797 2128267 ~ 2130172 (-) True G33804
TU45554 lncRNA upstream 157620 2192090 ~ 2192968 (-) True G33833
TU45556 lncRNA upstream 159817 2194287 ~ 2194607 (-) True G33835
XM_007259090.3 mRNA downstream 5566 1977614 ~ 2017175 (-) False LOC103047336
XM_007259091.3 mRNA downstream 16623 1977614 ~ 2006118 (-) False LOC103047336
XM_015608382.2 mRNA downstream 27030 1977614 ~ 1995711 (-) False LOC103047336
XM_007259089.2 mRNA downstream 27030 1977614 ~ 1995711 (-) True LOC103047336
XM_007259084.3 mRNA downstream 118112 1898185 ~ 1904629 (-) True xrcc6
XM_007259095.2 mRNA upstream 21630 2056100 ~ 2066246 (-) True LOC103022929
XM_022668896.1 mRNA upstream 21630 2056100 ~ 2063662 (-) False LOC103022929
XM_022668900.1 mRNA upstream 40160 2074630 ~ 2085960 (-) False LOC103023976
XM_022668901.1 mRNA upstream 41217 2075687 ~ 2087567 (-) False LOC103023976
XM_007259099.3 mRNA upstream 41217 2075687 ~ 2087537 (-) True LOC103023976
TU45334 other downstream 210119 1810586 ~ 1812622 (-) True G33675
trnar-ccu other downstream 896274 1126395 ~ 1126467 (-) True trnar-ccu
trnaq-cug other downstream 897205 1125465 ~ 1125536 (-) True trnaq-cug
TU44781 other downstream 1621429 389469 ~ 401312 (-) True LOC111192416
TU45452 other upstream 624 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other upstream 1655 2036125 ~ 2042274 (-) False LOC103022010
TU45542 other upstream 134553 2169023 ~ 2177059 (-) True G33823
TU45557 other upstream 160287 2194757 ~ 2196095 (-) True G33836
TU45650 other upstream 268792 2303262 ~ 2309329 (-) True G33904

Expression Profile