RNA id: TU45517


Basic Information

Item Value
RNA id TU45517
length 1465
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G33804
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2128267 ~ 2130172 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCAGTTACTCTGTCAACATTCTATCAATATATCATCTATACTGAACATACAAcactcaaacataaataataaaaaaataacattttcccTTATATACATCCTACACATTTGATGAAGCTAGACACAAAAATCACATGTTCAAGAAAAAAAGGTATGCATGTGGTGACAAGCCATTCatgccaaaacaaaaaaaatcaagtgacTACAGACTAAGATGAGGCATGGCTTTGgattttctattaaaatttTGTTGTACGAGGCACAAAGTTTATCATGACCATTCGCTTGACATGATGCTTGAAGATGTTCTTTTAGAAGCAGACAAGATTTTGAGACAAGTTAAAGTGGTGAAAGTTCCCATTTACAAGATCAGATATAAACAAGAATCATGACTGACCACTTGATAAACATTGAAAAATTATTGGATGTCCTTTTAGTCCATTTGTATGAACAGCTTTACAGATGTGCAGACCTCCAGCTGAAGCTTACAAACAAGAACTACTTGAGctaaaacaaaatcacacactGCTTATGCAACTCTTAGGTGgtgataacttttttttatggaatTTCTACTGCACTTACAAAAATGGAAACTTCTCACCATATGATTTGTTGACTCCAGACAACCATGCATTCTAAAGTTAAGAGAAATTAAGGATTTAAGTCATAAGCCTTCGTATCCTCACTTGAGGGTTCCGATTCACACTCTTCACTATACCTCCATGGTACACATACAGTGATACAGCCCGATATTCAAAAATCCATTGAGGCATTACATGCAAAAAATGCATCATATGTCCACAAGGTAATGCACATGAAACTTGTTGCTTAAAGCGGTGCCTGCAGTAATATCATTCATGTAAAAATAGACAGAGCAGGACCTGAACTATTTATATGGCAATCAATGCTGAACACTagacagtttttttaaacaaaatcacaGGGCATTCTGTGGATAGGATTATCCTAATGattaacaatataaataaatctgcaTCACTGCCATCTTCACTTATTGCCATTTaattacaaacacacaaacccaTGAAACCGATCAAGTATCCAGTAGCCTTAAAAGGGgccatctctttctttctgcagCATTCAACTTGGATATGTACATCTCAAGAAGACTGGCTTATTTCCGGCAGGTCCTGTGAGGAGtttgttttttctgattttctatACGGCAGCGACTTCGTTCATCAAGCCATGGCAGCTCGAAATTCATCATCAACCTCAGGATAAAATGATGACATCTCTGGCTCACTCTCCTGAACATTTATCTTTCTCTTCTCCATGCGCTGTTGGAGCCTTTGTAGCATACGCTGCTCCCGTATCCTTTGAATGTCCCATCTCTTCCTTCTCTTCTCATCCAGCTCCAGCTTTGCATGGCGTTTTAGAAAAACACCGTCATCAAGACTCTGCAGGTAGAAGAAAACCGTGCATATATGTTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649842.1 lncRNA downstream 45024 2080975 ~ 2083243 (-) True LOC111192348
TU45446 lncRNA downstream 53661 2074335 ~ 2074606 (-) True G33759
TU45403 lncRNA downstream 151682 1976329 ~ 1976585 (-) True G33732
TU45402 lncRNA downstream 152159 1975829 ~ 1976108 (-) True G33731
TU45353 lncRNA downstream 264755 1862786 ~ 1863512 (-) True G33693
TU45554 lncRNA upstream 61918 2192090 ~ 2192968 (-) True G33833
TU45556 lncRNA upstream 64115 2194287 ~ 2194607 (-) True G33835
TU45586 lncRNA upstream 156098 2286270 ~ 2287428 (-) True G33853
TU45658 lncRNA upstream 188436 2318608 ~ 2318897 (-) True G33909
TU45660 lncRNA upstream 203102 2333274 ~ 2334121 (-) True G33911
XM_007259107.3 mRNA downstream 7884 2117540 ~ 2120383 (-) True snf8
XM_022668901.1 mRNA downstream 40700 2075687 ~ 2087567 (-) False LOC103023976
XM_007259099.3 mRNA downstream 40730 2075687 ~ 2087537 (-) True LOC103023976
XM_022668900.1 mRNA downstream 42307 2074630 ~ 2085960 (-) False LOC103023976
XM_022668898.1 mRNA downstream 42307 2075687 ~ 2085960 (-) False LOC103023976
XM_007259113.3 mRNA upstream 846 2131018 ~ 2134043 (-) True chmp2a
XM_022668916.1 mRNA upstream 146585 2276757 ~ 2282984 (-) False psme3
XM_007259128.3 mRNA upstream 146585 2276757 ~ 2281258 (-) True psme3
XM_007259140.3 mRNA upstream 494766 2624938 ~ 2637751 (-) True dhx8
XM_022669429.1 mRNA upstream 1091175 3221347 ~ 3222998 (-) True LOC111192418
TU45452 other downstream 85993 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other downstream 85993 2036125 ~ 2042274 (-) False LOC103022010
XR_002649841.1 other downstream 93797 2022741 ~ 2034470 (-) False LOC103022010
TU45334 other downstream 315645 1810586 ~ 1812622 (-) True G33675
trnar-ccu other downstream 1001800 1126395 ~ 1126467 (-) True trnar-ccu
TU45542 other upstream 38851 2169023 ~ 2177059 (-) True G33823
TU45557 other upstream 64585 2194757 ~ 2196095 (-) True G33836
TU45650 other upstream 173090 2303262 ~ 2309329 (-) True G33904
TU45820 other upstream 1050996 3181168 ~ 3194377 (-) True G34046
TU45985 other upstream 1652953 3783125 ~ 3789192 (-) True prr15l

Expression Profile