RNA id: TU45542


Basic Information

Item Value
RNA id TU45542
length 6752
RNA type TUCP
GC content 0.39
exon number 9
gene id G33823
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2169023 ~ 2177059 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTTATTCAACTGACTTTTGTCATTTCAATCTTTCAAGTAAAACAATGTGGAATTACAAGGGAACATAAGGAATGTAACAAAATTAGAAGAgacaaaccaaataaaaaaaagaccaacACCATGTTTTACCCCTACCCCCCAAAACAAGTCTTTACTCCCAAAATGAGACAAAGACAGCATCTTACTGCCAAGGTtcagctgaaaagaaaaaaaaaattagaaggTTGTTGCAGGAGTATTTCCATTTAGTCTTGCCATAAAAAGGACCAAAAAAAGGGTGACAACGATTTACACGTAAggtgttttcaatttggttgcacttcaacaaaaaagaaaaatacacctCATGTGGTTTAGGATGGAAATATCTTTATTACACTttgaacattaaaaatgtttgaagCCCAAACGTCTTTCCTTAACAAGGCATACAAGGAGCCCCCTTCCATGTGGATCAACAGGCACTCTCACTTTGTCACACTGTTTGAGACTGTCTGACAAAAAAACCCCAGAAACAATGAGAAGTAGACCATATCGACTAATACTTTggaaaaggtgaaaaaaatgaGGTTGCCTCATATCTGTATTGCCAAAAAGCAAACAACAAGCAGACTTCAAGATTCATCACAAGCTCAAGAGCTGTACATACACATTGTGAGGTACCAGTAGAGAAGTCATTTGATTGAAAGGAATTAAAAACCTATCACAATGGGACATTATGTGAGATGTGCAAATGGAGAAATAATATGCAGGCTGGACTTAAAAGTAATGGACAGAACAAATTACAAGACAAGGAGGTCTGAGTAAAGACTAACTCCAGCATAGTGCAGCAAAACTCACATTTACAGACCTGCTCTCTTCTTCATACCCTGGAAGAAACCACAGAATATTCTTAATTTATCAACAGACTTGAAACAAACAATAGTCAACAGCTGGCAAACATTTTTGTCACAACCCAACTGTTTAAAAAGGGTATAACAATTGTACAGTCCCACTCAATTTTTTGAATGTAGCATAAATGATTTTTCGCAATCCCCTCTGCAGCACAAGTAAACTCTGTATAAAGGGTACAACCTAAGTGACCCATTTTAACACATATTTTTAGTATTCCAGTCTTTAAATGATTACAGTACATAGTGTGAACTAATAACTTTGCCCCTTGCCCAGCTTTCCAAAGTCCTTGGTGGTATGGTGAGGTATTGTCTATAAGAACATCACCGGGACTGCAATGCCACATTTTAACGGGTACCCTTTTTGTCCCATTTctgttgtgtatttatttatgctcCCTCTCCGCTCTAAAGATGGCTTAACTTGACATAGTTAGAATGCACTAGAAGTGAGTTCAGCTTGTCACAAAGTGCAACACACCAACAGTGTTAAAGAATGGCAAGTTATACGATTGATCCCCATTTGTCCAAACCCGTAAAACCTTTTCTCGTCACTGCAGTTCATTATTTCTACCAGCTTTCCGGTCCAATTCTTGTTCTGATCAAGTCTTGCGTTGCTGGGTGGTGGAGGAGCGGGTGTTGCTAGCTGGAGTACGTGCCTGAGCTGCTGCGAGTGCAGCTACACTCCGCAGCACTCTGTCAGGTGTTCCCTCACTAGATCCAGCACTTAGCTCTGGTCTCTCGTGCTTCTGTGAGCGTCTTTCTCTCCTACTTTCACGACCTCTACTTTCTCCTGTCTTTCTTTGcttgcttttttctttctccgtGTCACTGCCAGAGGAAGGAGCTCTTGAACGTAAGCGTGGTGGTCCAGTACTTCGTGAGCTTAGGCTGCGAGTGCACtgactgctgttgctgctgctccGGCTCCTGCTGCTGCCTGCACCTCTTCCACTGCTTATACTACTACAGGCACTGTGGCCTCTTGAAGACCTAGTCTCTCTGCGCTCATCCTCAACTTCTTCCttggtgtcagtttttttcttttcctctcttttgggctttttaatttcagtttcCAACGGAGGTACAAGGTTGCCTGGACGCTGCCGTGTAGAGCGGGCAACAGAGGGAGTTGTTTTAGTGGTGGACTGTGAAGAATCTGATGAATGAGTTGGGGTTTGCTGGCCACTAGCTGTTTTACTAACTAAATTTGTCTTTGGAGAGTCCTGTCCCGAGTTGCCCAAAGACTTGCTGCTTTTTTCAGTAGGAGACTGCTGTCCAATTGCTTTACTCTTTGGACTTGGGGTATCTGCGGCCCTTCCTCTCATAGCCAAGAGCTTAGCAGCAGCATTTAGAGCTGAGCATCGTTTGCCTAATACCTCAGGCTCAGGTGTGGTTATAGTACTCTGTGAAGCAGGCTGGAGCCCTGTGGATTTACGAGTTACCCTTACAGGAGTTGCTCCTCTGGACTCCCCTTCTACGTTTGCCTTAAGACTGTTTTTATCTGACCGCCTTTTTCTTCTCTTATCACCTTTGTCACCCCTGGTTTCCttctccaaacttttttgtgaTCGAGTAAAGCGTCTTTTGGGGCTGGAGGAGTCCTCAGAATCTGAGGACGACTGGGAGGAGTTGGAAGACTGCCTCCTGGCAGGTGTCATTGGTTCCTTATCAGTTCCTCTGTCTGTACTGTCTTTCTCAGAGTCTgtctctcgttttctctttACAGGTATCTTACTCTCTCCTGCCCTTTTTGAACGGGATGACCGAGTGCCACAAGAAGAAATGGAGGACGGAGAGGAGGACCGGACAGATTCTTGACTGCTTTGTCTTCTTATGCTTCTTTTCCTGCATGGTGTTCGGTTTTCTTGCTCTTCTGCCTGACGTTCCTCTTCTACAGGTTTATCAGTCCCGTCACTCTCAGAGGCAGTTTGCATCATTGCTTCTGAGATTGAAGGTGCAGGTAATCTTGAATCAGATATTTGACCATCTGACATATTATCCAATCTTCTCCTTTTAGCCAGAACCTGGGAACCATCACTGTCTACTTGCTCAGAATTTTCAGAGGGTCCTACTTCCATATCCTCTGTACTTTCCATCTTTTCGTCCACCTCGGATGCATTTGAGGCCTGCAGATTTTTAGTTTCACACTGCTTTGCAGGTGAGTGAGCATTGTGTGTGGTTTCCTCAATGGAAGCCTGTAAGGGCTGATGAGGAGGTTCTGTTATTAGGTTGGGTAATGCTGGGGATGGTACAGACTCTGAAGTGAGGCTGGACCCTAATTTTTCAGACTTGTCCTCAGTGGAAGCCAGTAGGGGCTGATGAGAAGGTTCTGTTGTTATTTGGTTGGGTAATGCTGGGGATGGTACAGACTCTGAAGTTAGGCTGGAACCTGATTTTTCAAGCTCATTCTGGGCTTCAGGAGGAGTATTAGGATTAAGCATAGGATGCAGTGAATCTGGTACTTCTGGTACATCAGATAGAGGAACAGGTGGCTCAGTCAGGCCAGATGCTGGTAATGTCGGAGAAGAGTTGTTGGCCACAGCTGGTTCAGATGAGAGCTCGTGTGATGGCTGTGAAGGCGTGGGTGAGGACTGCAGGATTGTAGTGGGACTAGGAGACATTTGTTCAGGGTCTGTGGCTGTCACTGTATTGTCAGGGGAAGCCTGTGCCACCAATTCAGTAGACATAGCTAAGACTTCTGGTCCACTCAAACTAGATTTTAACAACTGCTGGGGAGTAGAATCATTGCTTGTCACAGCTGCCGGTTGTGAAGGAGAAATAGTGACTTGACTGCTTTGACAGCTAGAACTGTCACTTGTTGTAGCAACAGGCTGTAGTGAAGGTGTTATATTGGTCTGACTGATGTTAGCTGTAGGAATGACTTCTGGTTGGCTTAGAGTGTTTAAAGAGTCAGAGTGTGGAATTGTGGTTTTCAGGGTGGAGTGTTCATTATTAGGTGTCAATTCAGTGTCTGTTAGCTTTATCTCGGATTCATCCAGTGTTTGAGCTGGAGAAATTAGTACATTGGACTGAGAGGTTTCAGATACAGTTTTTTGTGGTGGGGTGGAGTCAGATAATGCAGAGCTTCCTCCTGCACACTCAGGAACAGAGTGCAAATTTACAGGTTCAACACTAGAAACAGGAGAACTAATGTTTAGAGCGGAAAGGCTTTCCTGGGAAGGGCTTTCATGTAATGTTGTAGGACGCTCTTCTGCATCACCAGATTTACCACTGAGTGCAATATTTACAGTTGAATTCTTGCGAGGGCGACCCCTCTTTCGTTTCGGTGAGTGTGGTGGACTTTGTTCCTCACTCCTTGATCCCTGTACCACTGATTTCTCTTGTTCTGTGGTTTCTTGTGGCTTAGGTGCGGCCTTGCGAGGTCGACCTCTTTTGCGCTTCACAGGCGTAAGATTGGTTGCATTGGGATCAGAAGCAACAGTTGGACTTGTAGTGCTTTCCTGTTTCTTTGGTGACAGGGGAGTGCGCCGGTCTATCCCTCTGCCTCTACCCACGTACTGCTCTCCTAACTGAGCAGCCATACGAGACTCTGTCTCCAGGCGCCGGCGCACTGGTAAGTTGCGAAGGACAGGCATGTCTGGTGAATGCGTGGGGGAGTAAGGCTGGTACCCTCTCCCTGGGCTTGAGAGTGATGATGATGGGGAGACCTGCTCCTGCCCTTGCTGTATTGGGGGAGGAGATGTGGATGGTGACTTAGGAAGGGGCTTTTCTTTGAAAAGCTGACTTGCTTGATCAGGAGAGTGAGAAGTTGTATCTTGTACTGACTCCACCTGCTCTACCTCTTCTGATGAGCCTTCAGTGTGTATTCCTCCACTCCCGCTTGCTCCCCTCCTTCTCCGTCTTGGTTCTTTCTCTTCAACAACAGTAACCAGGCGTCCAGGAAGCTTCCTAAGGACCTTTGCAGATGGGGAATCCTCTGGAAGGCCTTTAAGGACTTCTCCGTCAGCAGTTTGACGTTTGCGCGGAGAACGAGGGTGTGAAGTCAGTGAGTGCTGACCATCCTGCTCCAGCAGCTGTTCTGGGGAGCAGATGGAGTCTGACGATATAGatgcccccctctctctctcgattGTATCCTGCTGAGGAGTCCCAGACTGTGACTCTGCAACAgactcttcctcttcttctttttgaaCTGGTGTCACTACAGAAAGGTGTCCAGTGGAGCCTCTCTCTAATGATGGAGGGGCCGCATCTGAAGGCACAGATTCTGAAGGAGAAAGGGGCTGTTGAAGTGGGGATGGAGCAGGTTTGGTCTTCAACACTAAATCTTGAGTTGAATGTTGAGCTTCTGAATCAGAGGCATCCTGATCAGTTTGTGGCTTCACAGGTTCTTCCTGCGTTGGTGCTGGAGAGGCCACAAGCTCTTTGATTGCCCCTCTCCCCCGTAGACCACTTCTTATTCTTTCAGGCACTTCTCTGGGCTGGGGGGACTTCAGGCTGGAGCTTGATCCAGAAGAGCGGCTCCCACCAGGTTCAGGGACCAGGGTCTCCACTTTCTTCCCTCTCTCCTTGTCTGGTGATGGATGTGTTATGGACACATCATCCATATTAGCCGGTGTCCCTCTAAGCCTACCACTGACACGTGTAGAAGGGGCACCTTTCTCCTTATGTTTGCGTGTGCGGCGAGTTGTAAGGTGCTCTTCAGGAGTGGGAGGCATGGAGTCCTCTTCATCATTATCAGATGACTGATGCAGTTTTAGGCCCTCCTCCTTTGCCTGATCTAGTCCTTTCCTTGCAGCTTCAACTTGCTCCTCTGCCTGTTTGAGTTCTTCTTTGCAAATATCTTCAAGTGAGGCCTCCAGGAAATTCATAGCATATCGCTCAATAGGGGTGAGCTGTTCAACTAAGGCTGCAATTTCCTGTTCAGCTTTGGAAAGTTCCTCCTCTTCCTGGTCTCTGCTTTCACCATCATCAAGTGGaatattttcattaaattcTGCTAGTTCAGCTACCTGTTCAGCTTTGGCTTGGGAAGCCGCTACTATGTCCTCTTCATCCTCAGCACGACATAAGGCCTGCTCTAAAATGTTGGTTTGCTGCTTATTGACGGCCTCTTCATCATCTGAGGGAAGAACAGTAGATTCTGTCTCCTTCTTCTCCCCCTCAGTCACATCAAACAGCTCTCTGATAGTTTGCTGTtttaaaaaaagcagtGGTGAAGTTTCCCCCTTCAATAGCCATATCTCCCAACATCCTCTTCTGATTAGCTTTTTTCAGGATATTTTCCTCCACAGTGCGTTCACTTATCAACCTGTAGATGTGAACATCTCTAGTTTGCCCAATACGATGGCAGCGATCTTGAGCTTGGGCATCCATAGTGGGGTTCCAGTCACTATCATAGAATACTACTGTATCAGCCCCTGTAAGGTTCACCCCCACACCACCACTACGGGTGGATAGGATGAAACAGAATATGCGGCGGTCTGCATTAAAGCGCTCCATCAGGGCCTGTCTCTGTTCCACTCGTGTGCTGCCATCCAGTCGTAAGTAAATGTGCCCATGGTAGTTGAGGAACTGTTCTAGCACATCAAGCATGCGGGTCATCTGTGTAAATATGAGCACTCTATGACCTCCAGTCTTCAGTTTTCGCAGCAGGAGGTGAAGAGTCTGCAATTACCACAGTCATACTGGATAAGTCTCAGGTCAGGAAAGTGGGTCCTCATATTGCATTGGACACGGTGCAGCACGTGCAATAGAGGCGAAACATGGGCAGACAGCATAGAGGAGAAAAGAGCCTGCTGGTGGCTGTGGGAGGGAGGAGGATGGCAGCAGTGCATGGTGATGGGCTTTGCCTCCACTGGAGGAATGACAAATGTAAACCTACAGGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45517 lncRNA downstream 38851 2128267 ~ 2130172 (-) True G33804
XR_002649842.1 lncRNA downstream 85780 2080975 ~ 2083243 (-) True LOC111192348
TU45446 lncRNA downstream 94417 2074335 ~ 2074606 (-) True G33759
TU45403 lncRNA downstream 192438 1976329 ~ 1976585 (-) True G33732
TU45402 lncRNA downstream 192915 1975829 ~ 1976108 (-) True G33731
TU45554 lncRNA upstream 15031 2192090 ~ 2192968 (-) True G33833
TU45556 lncRNA upstream 17228 2194287 ~ 2194607 (-) True G33835
TU45586 lncRNA upstream 109211 2286270 ~ 2287428 (-) True G33853
TU45658 lncRNA upstream 141549 2318608 ~ 2318897 (-) True G33909
TU45660 lncRNA upstream 156215 2333274 ~ 2334121 (-) True G33911
XM_007259113.3 mRNA downstream 34980 2131018 ~ 2134043 (-) True chmp2a
XM_007259107.3 mRNA downstream 48640 2117540 ~ 2120383 (-) True snf8
XM_022668901.1 mRNA downstream 81456 2075687 ~ 2087567 (-) False LOC103023976
XM_007259099.3 mRNA downstream 81486 2075687 ~ 2087537 (-) True LOC103023976
XM_022668900.1 mRNA downstream 83063 2074630 ~ 2085960 (-) False LOC103023976
XM_022668916.1 mRNA upstream 99698 2276757 ~ 2282984 (-) False psme3
XM_007259128.3 mRNA upstream 99698 2276757 ~ 2281258 (-) True psme3
XM_007259140.3 mRNA upstream 447879 2624938 ~ 2637751 (-) True dhx8
XM_022669429.1 mRNA upstream 1044288 3221347 ~ 3222998 (-) True LOC111192418
XM_007259177.3 mRNA upstream 1163553 3340612 ~ 3380599 (-) True ogfod3
TU45452 other downstream 126749 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other downstream 126749 2036125 ~ 2042274 (-) False LOC103022010
XR_002649841.1 other downstream 134553 2022741 ~ 2034470 (-) False LOC103022010
TU45334 other downstream 356401 1810586 ~ 1812622 (-) True G33675
trnar-ccu other downstream 1042556 1126395 ~ 1126467 (-) True trnar-ccu
TU45557 other upstream 17698 2194757 ~ 2196095 (-) True G33836
TU45650 other upstream 126203 2303262 ~ 2309329 (-) True G33904
TU45820 other upstream 1004109 3181168 ~ 3194377 (-) True G34046
TU45985 other upstream 1606066 3783125 ~ 3789192 (-) True prr15l
TU45987 other upstream 1606066 3783125 ~ 3789106 (-) False prr15l

Expression Profile