RNA id: TU45557


Basic Information

Item Value
RNA id TU45557
length 1339
RNA type TUCP
GC content 0.30
exon number 1
gene id G33836
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2194757 ~ 2196095 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tattattgttttcattattattatggttgttattattattattatggttgttattgttgttattgttattattaataataatattaatattaacattactCGCTTGTGATGCTACTGAAAACAGAAGATACCTCGTTACCAGGTACCACACTAACTATCTTTTCACTTTACCACAAAATGAACAACAGATTATAAGAGACAGTTAACATGCCCTGACCATTTATTTATCCATTctcacattaatatttatttttataattcaagGAAAGCATTAAGGCTTCATTATGTCCTTGAAAGAGCAGCTGCACTAGTGCTCAGTAGTGGAAACGTTTCATAATGTGTCCTCAAAATTAATGCACTGAATTTACATGATTCGTATCTGTATATGATTTTGACATGAACACAATATCAACAGTCTTTGCACAAcgtattttttcatgttttttattgtaccATTTCACGTACACCTATTACTGCAGACaattaaataacaattaaataaacgTTCGCGTTTGAAGCAGGACACATTGGGTGGGTTTACACATGTAAGTTTGATTAATCATTCCCTCATCAGGGGATTGTTCACCTCTCCActcccttatatatatatatgtatataaggtAGAGGAGGCAGAAGGTTACATGTCTCAAATACAATGTCCTACTACATTATATTGCTACGGTataattacattgcattacatggCAATTTCACAAATTAAACCGTTTTAAAACCACATTTTCCCGAAAATTTTCGACACAATTATCAGATGTCAGATACGCTGTCATTAGTGCCGAAATCGCTTATCACTTATATAGcaatatacatactatactgcTAATACAACTTGTAACTGTGTCATGAAAATGATTGTATGTctttaataacaaataaaaacagtgtcCTACAGTGCCAAAAATCTGATCCTTTCTTTAAAGAAACTGTCCAGTCAAGTAATCtggtaagtatatatatatatatatatatatatatatatatatacacgtcaCATCTTGTCTTTGACATTCATTTTCTTAAAGTGGCGTTTCCTTCTTTTCAGCTATGTGGGTTGCAGTGTCCTCTGCGCGCTGGCACCACTGTTTTTCGACTTCCTCTTGCTCATCTCTGCTGCTGGGGAACTTATCTCTGTTGTTCTCCTTCTTCCACTTCATCCTCCTGTTTTGAAACCAAATCTtcacctgtctctctgtcagcGCGAGTCCACGCGACACCTCCGCTCGCCTCCTGCGGCTCAGGTAGGGCCGGTACAGAAACTCCTTTTCCAGCTCCAGCGTCTGGAAGCGGCTGTACGTCTGTCTGCCTCGCCTCCTCCCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45556 lncRNA downstream 150 2194287 ~ 2194607 (-) True G33835
TU45554 lncRNA downstream 1789 2192090 ~ 2192968 (-) True G33833
TU45517 lncRNA downstream 64585 2128267 ~ 2130172 (-) True G33804
XR_002649842.1 lncRNA downstream 111514 2080975 ~ 2083243 (-) True LOC111192348
TU45446 lncRNA downstream 120151 2074335 ~ 2074606 (-) True G33759
TU45586 lncRNA upstream 90175 2286270 ~ 2287428 (-) True G33853
TU45658 lncRNA upstream 122513 2318608 ~ 2318897 (-) True G33909
TU45660 lncRNA upstream 137179 2333274 ~ 2334121 (-) True G33911
TU45659 lncRNA upstream 166255 2362350 ~ 2367740 (-) True G33910
TU45689 lncRNA upstream 319192 2515287 ~ 2544111 (-) True G33939
XM_007259113.3 mRNA downstream 60714 2131018 ~ 2134043 (-) True chmp2a
XM_007259107.3 mRNA downstream 74374 2117540 ~ 2120383 (-) True snf8
XM_022668899.1 mRNA downstream 108797 2075687 ~ 2085960 (-) False LOC103023976
XM_022668916.1 mRNA upstream 80662 2276757 ~ 2282984 (-) False psme3
XM_007259128.3 mRNA upstream 80662 2276757 ~ 2281258 (-) True psme3
XM_007259140.3 mRNA upstream 428843 2624938 ~ 2637751 (-) True dhx8
XM_022669429.1 mRNA upstream 1025252 3221347 ~ 3222998 (-) True LOC111192418
XM_007259177.3 mRNA upstream 1144517 3340612 ~ 3380599 (-) True ogfod3
TU45542 other downstream 17698 2169023 ~ 2177059 (-) True G33823
TU45452 other downstream 152483 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other downstream 152483 2036125 ~ 2042274 (-) False LOC103022010
XR_002649841.1 other downstream 160287 2022741 ~ 2034470 (-) False LOC103022010
TU45334 other downstream 382135 1810586 ~ 1812622 (-) True G33675
TU45650 other upstream 107167 2303262 ~ 2309329 (-) True G33904
TU45820 other upstream 985073 3181168 ~ 3194377 (-) True G34046
TU45985 other upstream 1587030 3783125 ~ 3789192 (-) True prr15l
TU45987 other upstream 1587030 3783125 ~ 3789106 (-) False prr15l
TU45988 other upstream 1587030 3783125 ~ 3789064 (-) False prr15l

Expression Profile