RNA id: TU45650


Basic Information

Item Value
RNA id TU45650
length 447
RNA type TUCP
GC content 0.45
exon number 5
gene id G33904
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2303262 ~ 2309329 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCAAACTCCTGCAGAGCAGGGTCAGTGTGGTCACTGGAGTGCACAGACTCTTCAGAGGGCTGAAGCTGGTCTTTCACCCGGTGGTGTAAAATGTCAGCTATGCACTGGGAGGCCCGCCGCCGTCAGCATGTTCTGGACCGAAGGATGGCCTCCAGAAGCAGGCAGGGTCTTACAGCGGACATGCAGAAGCAAAGCTCCGTGGAAAAGAGCCAAAGTGAGACACCTGTAACATCCTCAGTGTCCAGTGAACCTCTGGTAGCTGATAAGAAGATTCTCTGCAGCTGTCAGCTTGAAAAGAGAGAGCAATACAGCGCCAAGATTGACAACAGATACACAtCTATACAGTATTCCCAACAATGGTGAAGATGAGGGCTACAGATATTACTACGGTTCCACAGTGCAATATACATGCTGCTGGTATAACATTGAACATATTTAACTTAACA

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45586 lncRNA downstream 15834 2286270 ~ 2287428 (-) True G33853
TU45556 lncRNA downstream 108655 2194287 ~ 2194607 (-) True G33835
TU45554 lncRNA downstream 110294 2192090 ~ 2192968 (-) True G33833
TU45517 lncRNA downstream 173090 2128267 ~ 2130172 (-) True G33804
XR_002649842.1 lncRNA downstream 220019 2080975 ~ 2083243 (-) True LOC111192348
TU45658 lncRNA upstream 9279 2318608 ~ 2318897 (-) True G33909
TU45660 lncRNA upstream 23945 2333274 ~ 2334121 (-) True G33911
TU45659 lncRNA upstream 53021 2362350 ~ 2367740 (-) True G33910
TU45689 lncRNA upstream 205958 2515287 ~ 2544111 (-) True G33939
TU45696 lncRNA upstream 265058 2574387 ~ 2603189 (-) True G33944
XM_022668916.1 mRNA downstream 20278 2276757 ~ 2282984 (-) False psme3
XM_007259128.3 mRNA downstream 22004 2276757 ~ 2281258 (-) True psme3
XM_007259113.3 mRNA downstream 169219 2131018 ~ 2134043 (-) True chmp2a
XM_007259107.3 mRNA downstream 182879 2117540 ~ 2120383 (-) True snf8
XM_022668899.1 mRNA downstream 217302 2075687 ~ 2085960 (-) False LOC103023976
XM_007259140.3 mRNA upstream 315609 2624938 ~ 2637751 (-) True dhx8
XM_022669429.1 mRNA upstream 912018 3221347 ~ 3222998 (-) True LOC111192418
XM_007259177.3 mRNA upstream 1031283 3340612 ~ 3380599 (-) True ogfod3
XM_007259176.3 mRNA upstream 1073446 3382775 ~ 3390578 (-) True LOC103047433
XM_007259173.3 mRNA upstream 1094618 3403947 ~ 3532389 (-) True myo1d
TU45557 other downstream 107167 2194757 ~ 2196095 (-) True G33836
TU45542 other downstream 126203 2169023 ~ 2177059 (-) True G33823
TU45452 other downstream 260988 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other downstream 260988 2036125 ~ 2042274 (-) False LOC103022010
XR_002649841.1 other downstream 268792 2022741 ~ 2034470 (-) False LOC103022010
TU45820 other upstream 871839 3181168 ~ 3194377 (-) True G34046
TU45985 other upstream 1473796 3783125 ~ 3789192 (-) True prr15l
TU45987 other upstream 1473796 3783125 ~ 3789106 (-) False prr15l
TU45988 other upstream 1473796 3783125 ~ 3789064 (-) False prr15l
TU45984 other upstream 1474079 3783408 ~ 3789064 (-) False prr15l

Expression Profile