RNA id: TU45658


Basic Information

Item Value
RNA id TU45658
length 290
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G33909
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2318608 ~ 2318897 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGTTTGCTCTCTTCTCGCGTTGTTGCATGTACTTGATGCACTGGCACAGGAAAAGACATGTTCTTTAGCCATGGTTAGTGTGGCAACAGGTATTCATAAATCAGGTggtgatgtgctgctctccagtatcaacaacaccatataTTTCCAGAGCATTTAACTGTTTTACCAAATTttattggtgttttattttGATTAGGGCTGTCAAAATTAGGGTCTGTTTCCAGCCCTGTTTTgattgtcacatttttattttaaagggagTCCTACAGTAACATCATGTTGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45586 lncRNA downstream 31180 2286270 ~ 2287428 (-) True G33853
TU45556 lncRNA downstream 124001 2194287 ~ 2194607 (-) True G33835
TU45554 lncRNA downstream 125640 2192090 ~ 2192968 (-) True G33833
TU45517 lncRNA downstream 188436 2128267 ~ 2130172 (-) True G33804
XR_002649842.1 lncRNA downstream 235365 2080975 ~ 2083243 (-) True LOC111192348
TU45660 lncRNA upstream 14377 2333274 ~ 2334121 (-) True G33911
TU45659 lncRNA upstream 43453 2362350 ~ 2367740 (-) True G33910
TU45689 lncRNA upstream 196390 2515287 ~ 2544111 (-) True G33939
TU45696 lncRNA upstream 255490 2574387 ~ 2603189 (-) True G33944
TU45697 lncRNA upstream 256136 2575033 ~ 2603189 (-) False G33944
XM_022668916.1 mRNA downstream 35624 2276757 ~ 2282984 (-) False psme3
XM_007259128.3 mRNA downstream 37350 2276757 ~ 2281258 (-) True psme3
XM_007259113.3 mRNA downstream 184565 2131018 ~ 2134043 (-) True chmp2a
XM_007259107.3 mRNA downstream 198225 2117540 ~ 2120383 (-) True snf8
XM_022668897.1 mRNA downstream 232648 2075687 ~ 2085960 (-) False LOC103023976
XM_007259140.3 mRNA upstream 306041 2624938 ~ 2637751 (-) True dhx8
XM_022669429.1 mRNA upstream 902450 3221347 ~ 3222998 (-) True LOC111192418
XM_007259177.3 mRNA upstream 1021715 3340612 ~ 3380599 (-) True ogfod3
XM_007259176.3 mRNA upstream 1063878 3382775 ~ 3390578 (-) True LOC103047433
XM_007259173.3 mRNA upstream 1085050 3403947 ~ 3532389 (-) True myo1d
TU45650 other downstream 9279 2303262 ~ 2309329 (-) True G33904
TU45557 other downstream 122513 2194757 ~ 2196095 (-) True G33836
TU45542 other downstream 141549 2169023 ~ 2177059 (-) True G33823
TU45452 other downstream 276334 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other downstream 276334 2036125 ~ 2042274 (-) False LOC103022010
TU45820 other upstream 862271 3181168 ~ 3194377 (-) True G34046
TU45985 other upstream 1464228 3783125 ~ 3789192 (-) True prr15l
TU45987 other upstream 1464228 3783125 ~ 3789106 (-) False prr15l
TU45988 other upstream 1464228 3783125 ~ 3789064 (-) False prr15l
TU45984 other upstream 1464511 3783408 ~ 3789064 (-) False prr15l

Expression Profile