RNA id: TU45659


Basic Information

Item Value
RNA id TU45659
length 5353
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G33910
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2362350 ~ 2367740 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCAAGATAAGAAAAATAACATTGCCTTTTGAAATCAAGTGCACTTCAACAAACAGTGTCTGTAAGGAGCTGAATGCTTTGCTTCGTGGAGTGATCACATAAATCAAAAAATAGAGAATCAGTCTTCAGAGTAAGGCTTTATGGTGGGATGACAGGAGAGCACATGCTGTGTCCTTTTCCTTCTTCTACAGTGAGCTGATATGAGTTTAAATACATGGAGCGTCAAATGAGGCTTAATATTTAAGACTTGTGacataaactgaaaaaaaaaaaaaagaatgtagtGTGCCTCACTCTGAACGTGTCGAAAATTTGGCAGTGTGGAAAAGTGTGCCAAACCCACCATAAGAACCTACAAGGTAGGTTAGCAGTAACTTCAGTGCTGCTGTATTATTGTAATATACTGGTGAGGTCTTTCATTTGACACATTAAAGTAATAGCACAATCATTCTGGCACAACAGGCAGCACATGTACAATAAGTAACGGCATGTACTCCACTATATGTgaacattgtgtgtgtttgtgtgtgtgtgtgtatgtgtgtgtgtgtgtggtgggtctGTAAGCTTACAAGTCAGCTTGTAAAAAGATGCAAAAGCATAGACAGAATACCCAACACTTACACTCGTGCTGACTAAATATGTAGAACTCTGGATTCATTAGCAAGGATCAGAGCAGACCACAATCAAGACAATCAAGTAAGCTCTTTAGACAGCGTAGCATTGCATCTTAGTAGTTTGGTTTACATAGACCAGCTCAAAATGTGATTTCATAGCATCCTTataagaacaaacaaacaaaaacaacataataGAAAATGGGACATAAATACAGATGGTCAAGCAGCATTGCAATCACTGTTATAGTACTATTGACATCATTAAGCCATACAGTAGACCATTACCAGCTTTACACATTTCACAATACAACTCCATAAGAATTACTAAACAACAATCCTAGCAGgacatttttaatacaaaccACAGGGGTTTGCCAACAGCAGGTGGCAGTGTTTCTCTCCActaattaatttacttaaaatagtaCACCATCAGGAGCTCACAGGCAACAAGCAGTGCGTCTAATCCTTAGTTTCCAGTGAAAAGAAGTAAACATCAAATTGGTttgatataataaatattttaaatacatcaaTTTAATTTTAGACAGTATACAACCTTTACATGAAtacaatattttcatatttagatAGTGAAGGACTTTCAGAAGAATCCTAGGTTCGGCATTAAATAGTGTGACACTCTTATACAAGTAATATAAGAGAAATATAACAGGATCTGGTTTTAGACACCAACATATTTTCGGAAGAATCACAGAGCCTGTTTACTCCTGGCATTGACATGCATTTTTAGTGATCATATCATGTTTGGATTTCACTTCACTGAGATATGAAACTATATTTGGAGGTGGTCAGAGATGGATCTCATCCACATTTCTCACAAGTGTAATCCGAATAAGTATTTTGTGGTCAGATTCCAAGTGATCGGATGCAAGTATTACAGAGTGACTTTCCCTGCTGTCTAAATAACCGGATACGCTGTCTATTACAGCTGTTACAGGAATGTGAGAACCATCTATTCTTCCACTGTGCTGCAGAACCACCACTGTTCACAGCATCTTAAGATCATTTAGATGAGAAACTGTTTTGTAGAGGAAGTAAAATAGAAATTCAATACATAAGATCGGTTCTCATCTAGTCACATTGGAGACGCATTTAAGTGACAAGgcaaactttattaatatacgATCCAGAATAGGtgtgggacaatatattaaaattgtatTGGTACGTGGCatcaaataaaattgtatttattgaaacatatatatataaacttgaGACTCGCCCACCAGTTGgatttactaaagttactggAATATTGGatgtcaaattctgtgaaactgacaccaataagtCCATAATTcctgttatttgttatttaagagtattttatACCATAAGGTATCGTAGAGAACTGTCTTGTCTTGTGATTTTTAAAGTATTGCAAAATCACAATACTGAGATATCATCATCGTAAGCAACgtattgtaataatatttcATCATTAGATGCGCTGTGATTCTCACCCCTAATCCAAATACAAACTGTATGTTAATGCCAAGAGTATACAGGCTCCTACATTCCGCATTTGTCGATGATgagatttgtttttaaatcatttgcCTTATAGACACTTTTATAAGAATGTTGGGTTATTAAAGCGTATTATTCAGTAAAGAACTTTCCTAAAATGTGAAGTTCTCTTTAGTCAGAAAATCCTAGGTTCTGATTTAGACTATAGATGTCCATATATTCAAGTTAACATAGTGCAGGAAAGCTGGAAGTAAagcatatcatatcatatttcaTATCATAACCTTTTTACTTAGCACAGTCCACACTCGTCACCGTATGCTTCTTGTGACGACACACAAGTTTCAGTAACTACAGTAGGTTAGGTTTTACAAAAGCCTAGGTCTCCAGATTACAATATAGGAATGTTTATAGTTCGTATGTGTGTTgtaaatacatctatattattttttttttattattattattataaatattttttacaaagaCATTTATGAATTATGGGTTATGGAGAACTAAATATAACATGAGCAGCCAGGTATGGTAGGAATGTGAGGTAGCCTGTGACAGTGTTAGCTGTGAAGACAGACTCTGGCTCTCTCTCAGACATGATCAGTGTGATTAAactagattaaaaaaagatgtaCTAAGCCTGTGGTCACCAACGCTGCTCACGAAGAATCTGAAACCCTTTAGCAAAGAGTAGTCCAACCATAACCTGCTTCAGAAGTCTTTAACTGGCTGGATCAGGTACAATAGAATGAGGTGCAGGGTGCAAGTGTAGGGCTCCAGATTGttagaataataaagtatggaCTTAAATTCTGAGGGAAAATTTACAGCTAAATAAATTATATCAATACATAATTGCAAAATAATCTGTTTGTAGGGAGTATACATTAACATGATGCAAATCCTGGCTACAATAAGTTAATAAGATAACTGTTAGTTAATACATACTGTACTTGTAATGCCTATACAGTTTATAATACATTCATATATGTCAACACctaaatatgtatatacacgtatatatttctgtaagcatataaatatagaaattggagtaatagtaataaacagCATCTTGTGGTGTAATGTGGCCTAGTTTCTATAGTGGGTTGAGTGAAATATATGAGTACCCTCAATCTTTAGAAAATAGTGAAATAGAGAAATACTGGGAAAGGCCCAGGGTCATGAGTTCAGTTAGATGCTAGTGAGAAGTCCATAAACTAACTCAGATTCATTTTGTGCACACTGTCGAAATGTACCGAGAGCAACTGGCTAGAGCTCTTTTACAGTCAGTGGAAAGACATGTTCCTATTCAGGGCTGTTAGGGCAGTCTGAGACCCAATGACAAGGTCAGCTTCAATAATTCtcattgctattctaataatgctAGTGACAGcgaaacactacacacactactgaCCCTCTTTCTTTACATTACTAAAACCAAGGCTGGCTAGACCTCATCCTTTGAATACAGTGCGACTTGACAGGCTAAAGGGGTGCTGATTTATGTAAGCAAACACACGGGCAGTGTGTCACAAATAGGCAGAAAGGCAGTTAATGTGATTGGCCTACTCTACAGCTTGACAGTGATCTTGCGGAGGACAAAATGGATTGGCAGTGAGCAACTGGCGTATCAAAGCAGTGTGATTCTACAAAAACAAGGATTCAAAGGTCCGGTGGGGCGCATAACTAGGTCACTGCTGCATAAATCTGGCCAAAGATGCTGAATGAACAATGCTTACTCAACTGTAGACATATGGGTCTGTGTTCAGTAAATGGCTGGCTAGTTATTAGCACATTGTGTACCCAAGACAGTGCTATTCTGAACAATACGGAATGTTAACCTACCACATCACCCATGCCATCCTCAGTCACTAagaaacagaaatgttattttgttgttttgctgaTATTGGATGTTTTTGTTAGGAAAGCAAGCCTAATGTGAACACAAAATTAAATACCCTGTCAGTCGTCTAAACTATAACATTGCTGGAGTGTTGGCGTGTTGGGAATCTCATGGGTAGTATCAGTTGCACAGAGTTAATCTGGTTTCCTACCAACAAGGGCATTGATTTAGCAGAGTACTGTAAAAGGGTCATTTCGGTGCTTTTTCATAGAGGTCAGTGTACATTGGACTGCAAGTGCCTAAGCATCAAATTCCTCCACGTTCAAATTGGAATGGGATCGATAAATTGTGAAATTCCCGGCAGTGGGAGACTACGGAAGGACTGTGCTCTAATCTACACTCTCTTAAAGTGACCTGGGCTGTAGAGCTCCAAAAGGTGAAGACGTTAGACTTACAAACAGGCAGCAATAGGAATGCTTTAAGCCACATACTGTAACAGGTCATAAAGTGACACTCGTTACTGTGAGAGatggtgaataaaaaaaaaaaaggcagagtAAAAGTTGTAGATTAAAACCCACAAAACTCCATCCCCCTCTTTTAGCATTACTGCTGCAACATCAGTTTCCATGAGAAATAGTCATTTACACTGGCAATCACAAGAATTACAGGTTCATAAACCTACACTTTGTGCATGTGTTTTTAGGTGTGTATGAGTTCACGGTCAATCATTTCACCCGTTAATAGGGGTTAAATGGTACACAAAAGTTACGATTCGGTGCACACTGCAATACAGACCTTACAATTTAGAGCAATTTTGGTACAATGGTGAAAAAAGCAACCAGACCACCATGCACGTTTCATATACCAATTAGCTTGAGCTAAGACTAGCATGGCATGTTTCTTACTTGCTAATGGTTAACAGCTTCAGTCAGGGGTTTCCAAGCTTTTTCCAGCCAAGACAAAAGACTATAAGTGCATCCCAAAAAACATCTGCACCAAGTTATTTCAGACATATTGTAGTAGTCGTTACAGCAACCCCACTTGTGGCAGTGTTTTGctcaaatatgtgtttttttgtagctaTAAGACTCACAACAAAGCTGTTAAGAAACTGATCTGGGGTCAGTTGGTTGCTCTGTATCTGATCACCCTTATTGATAATGTTCATTTGACGGCTGTGTTACTGGGAAATAATCAGTCACTGCAGACAACAAAGGAATACAACAATGTTTTTCTCTGTATGACTGCATGCACCGAACCGTGATGTATGTACCTTGGCGGTTtagaacaaatacatttattgttACACCTCTGTTGTAACCGGTGTAACATTAATTGTTACACCTTTCAATTACTGTTCAAACTGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45660 lncRNA downstream 28229 2333274 ~ 2334121 (-) True G33911
TU45658 lncRNA downstream 43453 2318608 ~ 2318897 (-) True G33909
TU45586 lncRNA downstream 74922 2286270 ~ 2287428 (-) True G33853
TU45556 lncRNA downstream 167743 2194287 ~ 2194607 (-) True G33835
TU45554 lncRNA downstream 169382 2192090 ~ 2192968 (-) True G33833
TU45689 lncRNA upstream 147547 2515287 ~ 2544111 (-) True G33939
TU45696 lncRNA upstream 206647 2574387 ~ 2603189 (-) True G33944
TU45697 lncRNA upstream 207293 2575033 ~ 2603189 (-) False G33944
TU45809 lncRNA upstream 692629 3060369 ~ 3085406 (-) True G34036
XR_002649845.1 lncRNA upstream 739462 3107202 ~ 3189436 (-) True LOC111192350
XM_022668916.1 mRNA downstream 79366 2276757 ~ 2282984 (-) False psme3
XM_007259128.3 mRNA downstream 81092 2276757 ~ 2281258 (-) True psme3
XM_007259113.3 mRNA downstream 228307 2131018 ~ 2134043 (-) True chmp2a
XM_007259107.3 mRNA downstream 241967 2117540 ~ 2120383 (-) True snf8
XM_022668897.1 mRNA downstream 276390 2075687 ~ 2085960 (-) False LOC103023976
XM_007259140.3 mRNA upstream 257198 2624938 ~ 2637751 (-) True dhx8
XM_022669429.1 mRNA upstream 853607 3221347 ~ 3222998 (-) True LOC111192418
XM_007259177.3 mRNA upstream 972872 3340612 ~ 3380599 (-) True ogfod3
XM_007259176.3 mRNA upstream 1015035 3382775 ~ 3390578 (-) True LOC103047433
XM_007259173.3 mRNA upstream 1036207 3403947 ~ 3532389 (-) True myo1d
TU45650 other downstream 53021 2303262 ~ 2309329 (-) True G33904
TU45557 other downstream 166255 2194757 ~ 2196095 (-) True G33836
TU45542 other downstream 185291 2169023 ~ 2177059 (-) True G33823
TU45452 other downstream 320076 2035094 ~ 2042274 (-) False LOC103022010
TU45820 other upstream 813428 3181168 ~ 3194377 (-) True G34046
TU45985 other upstream 1415385 3783125 ~ 3789192 (-) True prr15l
TU45987 other upstream 1415385 3783125 ~ 3789106 (-) False prr15l
TU45988 other upstream 1415385 3783125 ~ 3789064 (-) False prr15l
TU45984 other upstream 1415668 3783408 ~ 3789064 (-) False prr15l

Expression Profile