RNA id: TU45895


Basic Information

Item Value
RNA id TU45895
length 2128
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G34101
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3391629 ~ 3399113 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTATTTTCCATCacagtacaaaaataaataaaaataagcaaaaccaaactgaaaaagTTCAATTACAGCAACAACTttgtctccttttttttttttaaagaatgtaaatgtaacagtTCGGAACCCGACCCCACCCACCAGTCAAACTCCATCCCGTGTTGAATTCTCCTCTAAAAAGCATTGCCTTACGTTCTCCCCAGCCCccgtaagaaaaaaaaaaaacttagacaCTCCTCTATACAAATCAGCtctcacacagtcacacacacatgcagtctTTGAGAGTGCCCCTCTCTTTTAAGACTTGTaacatgtctttttttgttgttctacAAAGAAATATGTGacgagatacagaaaaaaatgaccgCTGTAATCTAGTacacttctcttttttttgtcttttttttaagtttttaaaagtgtttccTCTCTTACAAATGACAAGTCAGTGATGtaagtgaaaagaaaaatggCACATCATAGTGAAGTGGTGGCAACTGATGGCAGGCAGCAAAGGAGGACTCCCCTGTATTAGGCCTGAAGACTTAAAAGCCCCTTTAGTTTCCTCTGAGCTGAATCCAGAGAAAAGTGCTAGTCCCTATGGCGCTACTCAGCAGTCTTATTCAGAACCCACTCAGTGCACATTAGCCACCACATTACTACCTCTCACATCCTCCACTACATTCCCGCATGCCCTCTGTCAGACACAACAAGGCAGCAGAGAGGAGCAAAAACCATGCCAATCCAGTGTTTCCACACATTCTGCAGTTCAGGGGCATTGTTAATACCACACAGCCATCATATGTACTCATACTGTCCAAGGATGAATGATCACGTCTGTTTATATGACGTTTACTACGTTTcctagctctgtaaaaaaaaaatctgagataCACAACTACTAAAAGAAAGCATGCGTAGTTTATCACTGCTGAGATGATCAGAAATCGGGCAATTACACATCAACCATCTGTaaactcctcctcttcctcgttTGATGAGAATTCAGCTGGATGACTCAATATACCTCAACCTCCTACAATGAAGTAATAAAATGTTCCTTTCCTTGCAGCATCTGACATTGACATAATCACAATCGCATTTATCcaaatttagaaataaagtTGTAAGCAGCATATTACGCCCACAAAATAAAATCCCCAGCTTCGGATAAATGTTTCATTCAGTGACATTTTGGTCCTTAAGCTCCGCATGTCAGACATTTCCAAGCATGGCTTGTCCAGCTAAAATCCTGCTTTATCTGGACAGAGGTCTTACAAACTGACCCCACAGCCCCATCTCATCCAGTCCACCGCAGGGAACCGTGTTCCATTAATGTTTGGCTTATGTTGGAGTAATCGCTCTCTCAGGCTGTCATTTTCTACCGTGACATGAAATGACTTTAAGACAGAAATAGACTGCCTGCCAGTGATTGCTTTTCGGCTATTGATATGTGGAATGTCCCAGCAGTTTAGAACCAGAATGGACTTATGGTGCaggtcagaaagagagaaagagagagagaaaatggtcTGAAACCAACAGTTTCTTGTTCCTCGTGTAACTGATGAACTACCCTTGGCGATGCTCAGATTTGAAATAGATTTTCAACTAAGCTCCCCGATGGAACATCCTTAGCTAAATCCTTCCAATGCACATTTGCATCAACTACAATCTTCATTTCCACCAAAGGTAATCATGTCTGCCCCAAATCACCTACATCTAAATGCTACACATGAAAGTAGCCATTGTACCATTCATctgtacaatacaatactacactttttttaaatacaaggGATGTGCTAagagaataaataaacagcaataaattAAGAGTGAATAGATATTCTCAGTAGTAATGAACCGTTTCAAAGATCACCCTCCTTTGGTGTGTTTCTTAGACCTACATGATTTTTATCAAAGGTATGGCACTGTTtctgtaaaattacatttagcttttttttattacattgcttttttttctatggACTCTTGCTCAAACTAGACAGTGACACTTAAGACAAAACAACTAAAGATACTTTGTAAGATCATGGCTCATTGTAGCAAGCATAGCTAAATAAACTagatttgcctttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649845.1 lncRNA downstream 202193 3107202 ~ 3189436 (-) True LOC111192350
TU45809 lncRNA downstream 306223 3060369 ~ 3085406 (-) True G34036
TU45696 lncRNA downstream 788440 2574387 ~ 2603189 (-) True G33944
TU45697 lncRNA downstream 788440 2575033 ~ 2603189 (-) False G33944
TU45689 lncRNA downstream 847518 2515287 ~ 2544111 (-) True G33939
TU45962 lncRNA upstream 329529 3728642 ~ 3728960 (-) True G34159
TU45973 lncRNA upstream 378787 3777900 ~ 3781741 (-) True G34166
TU46051 lncRNA upstream 440890 3840003 ~ 3842727 (-) True G34218
XR_455620.2 lncRNA upstream 481469 3880582 ~ 3883412 (-) True LOC103038927
TU46069 lncRNA upstream 504221 3903334 ~ 3903569 (-) True G34230
XM_007259176.3 mRNA downstream 1051 3382775 ~ 3390578 (-) True LOC103047433
XM_007259177.3 mRNA downstream 11030 3340612 ~ 3380599 (-) True ogfod3
XM_022669429.1 mRNA downstream 168631 3221347 ~ 3222998 (-) True LOC111192418
XM_007259140.3 mRNA downstream 753878 2624938 ~ 2637751 (-) True dhx8
XM_022668916.1 mRNA downstream 1108645 2276757 ~ 2282984 (-) False psme3
XM_007259173.3 mRNA upstream 4834 3403947 ~ 3532389 (-) True myo1d
XM_007259172.3 mRNA upstream 146320 3545433 ~ 3555219 (-) True LOC103046317
XM_007259167.3 mRNA upstream 350058 3749171 ~ 3770492 (-) True LOC103044690
XM_007259165.3 mRNA upstream 371526 3770639 ~ 3776185 (-) True mrpl10
XM_007259163.3 mRNA upstream 384295 3783408 ~ 3789161 (-) False prr15l
TU45820 other downstream 197252 3181168 ~ 3194377 (-) True G34046
TU45650 other downstream 1082300 2303262 ~ 2309329 (-) True G33904
TU45557 other downstream 1195534 2194757 ~ 2196095 (-) True G33836
TU45542 other downstream 1214570 2169023 ~ 2177059 (-) True G33823
TU45452 other downstream 1349355 2035094 ~ 2042274 (-) False LOC103022010
TU45985 other upstream 384012 3783125 ~ 3789192 (-) True prr15l
TU45987 other upstream 384012 3783125 ~ 3789106 (-) False prr15l
TU45988 other upstream 384012 3783125 ~ 3789064 (-) False prr15l
TU45984 other upstream 384295 3783408 ~ 3789064 (-) False prr15l
TU45986 other upstream 384295 3783408 ~ 3789106 (-) False prr15l

Expression Profile