RNA id: XM_007259170.3


Basic Information

Item Value
RNA id XM_007259170.3
length 6383
RNA type mRNA
GC content 0.44
exon number 10
gene id tbkbp1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3564030 ~ 3659132 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGgaaagcagaagcagcagcggcggcggcggcagcaTCATCCGGCGCACAGCCTCTCTCAGCTCGCACTGCTGGGGTTTCTGGACCCCCGGACCCCCGTTAAGCCATGGCAGCCGAGGTCCGGTCAATGGGGCGTCGCTGAGGAAGGGGAGTGAGTGATGGAGTCTCTGTTTGGGGGGGAGCTGGGCCTGCTGGGGGGCAGTGAGGGACTGAAAGAGGATGGCTGTGGAGTGGGCTGGTCCGGATCGCCCTCTCCGGAGGACATGTACTCAGCCTCCCACTTCGCCCTCATCAGCGCTTACCAGGACATCAAGACCAGGCTGGTGGGGCTGGAAAGAGAGAACACCGACATCAAGAGGAAACTGAAGATCTACGAGATAAAGtttccTATGATCGGTGACTTCGGCGATGACAGAAATTCCTACTGCTCCTTTGAGCCCAAAGACACAGCTCTGCTCCAATCAGAGAACGGCAATCTACAGCAACGAATCAACATCCTTACTCATGAGCTTCAGAAGAGTAAGGAGCGTGAGGAACAGCTGGAAGATGTGATTCAGGCCTATGAGAAGATCCACATGGAGAAGAGCAATCTCCAAAGAGACTTGGACAAGATGACGTCTCTGGTGGAGAAGCACGTGGAGCGGATCCACAGTCTGGAGTCTGCGCTGAGGCAACGAGAGAGCTCACTCCACAAACTGAACACACAACTGCACAGCAAAGACATGCAGTACCTGCAGCTGCATGCCAGCCCAGATACACACAGACTGGACTGTCCAGCTTTGACCCTTCAGAGCTCCCGCAGTCTGGACACTCTGTCCGATCTCAAACTGCAACAGCTGGAGGCGGAGCTAGAAGGGGCGCGGCACGAGGCTCAGGGGGCGTGCCAAAGGGAGGAGGAGCTAAAGGCTGAGTGTGAGAGACTGCAGGAAGAGTTAAGAGAGCTTCAGAATAACCAGAGGCAACGGGAGGTGAACTCCACCTGTGCCCAGTGTGACGTGGAGTGGATAAAGAAGGTGGGAGACGAACAGGTGAACCTGGCCCTGGCCTACACTGAGCTAACCGAGGAACTTGGCAAGCTGCAGGCACTCAGCGCCAAACAGACAGAGATCCTGAGGAAAGCCTCGCAGGAGCAGGCCAGTCCAGTTCAGCGTCATTCTCCTGTGCCTCTCCAGAGGCATTCACCTGTTCCTCAGCGCCACTCCCCCATCCAGCAACGCCACTCCCCCATCCAGCAGAGGCACTCCCCTGTGCCCCAGAGACGCAGCCCAGTGCTGCAGCGCCTTTCCCCAGACATGCACCGCCGCTCACCCCTGCCTGAAATCAGCGATGGCCCCGCCTCCTACTCCTGCAGGCCAACCATCCACCACCTGAGAGCCAGCTTTCAAGGGCGCCGGAGCTACTCGGAAGTAGCAGACCCATCGGCCTACCAGCGGCCCCCTCGCTTCACCCTGGACCCCGTCTCCACCCTCCCCAAACCCCGGCCCTATGTGGAAAGCTACCACAAGCAGCAGTCCCCACAACaatcacagcagcagcagcagcagcaacacggAGGCAGCCCTCACATTCTATCTCAGAGACGAGGCTCGCAGCCCGGGCTTCAGGTCGTGGGAGGTGAAGGGAGTCTAGCTGAATCCCCGAGACACTCCAGAGAGCTCTCTTTCCAGCACCAGGAGTTGTCCCATCTGCATTACGAGCCCCAGCCAGGCCCGGCGCCACTCCATTCCTCCCCCCAGCCACCCCATTCCTCAGAGGACGAGGAGGAGTGGACCTGCCCCCATCCTATCAGTCCCCCGCGGACACTGGGCGCTTCTGGCCCTGCCTCCAGCATGAGAGGCCCCGCCTCCTGCTCCGCCTTCCCAATACCAGCACGCCCCAACACACTAAGCTGCCATCCACCTGGGTACCTGCATGCAGAACATGCCCAGTCCTGGCCTTCCATTAATCTGTGGATGGAGACAGAGGAGGAGAGTGATGTCAGGAGCTGCCCGCTGTGCCAAGTGATCTTCCCCATTGGTTACCCTGATGACGCCCTGATCAAGCACATCGACTCGCACCTGGAGAACAGCAAGATCTAAcaccccccgccccccctcacACCCCTCACACCCCCACCTCTCTTTTAGACTTTCACTAAAGTCTCATTAGCAGCTCTTATGCGCTTAGCTGGATGCCTTGAAAGTGAGAGGAGAGCCAGCATGCTGAGGTAAGATAAAGCGAGGCCTTATAAAGTGGGGCTGATTGTGATTCTGTAATATCATAGCAGATGTATATGCAGTGTTTATATGGTGTTACGTTATGAATGCCACCGAGAGATGAAAAAGGCTTTTAAGGCTCCTTCCGAGCGCAATGTAATCACgaccctatttatttatttatttatttatctatttattcatttgtttatgtATTCGAGATGTTGGACTCTTTTTCACTGTCATATCTCCCTGCACACAGACTGACTGTCCTTGGAGTTAAAAGAGCAGTCATAATCCAAATAAACCACTCCCATAAACACGCATTACTTCTCCTGACAGAGTAAATTCAAATGTTTGGGATGTAACTATTGTTTCTGTACCACTGCAAACCTCTCAGAGTTTAAATGAGCTGTTAGCAATCCTTTTGTTGACTGTTATGAATTGGGGTACAGCAAGAGGTGGGTAGCGACTAGTTACAGTTATGCAGTTACATATATTTACAGGTGCCAAAGAGTCCGTTTATTGAGCATTTCAAACAGTTCttccatttacctcagaagtcgGATGTCAGAGCTAATAATGACGTCACAGCGGAGTTGACAGTTTTCACAAACAATACTTATCAAGGTTTGTCATTAATTTACCAGTGTTTTTTGGTGAATCCAACTAAAAAAATCacccagtttttattttatgtgcaaTGATTGTTAGCATAGTCCCAGATTAGCTTTGTTGTTGCAGTATTTTGCACAACAGAATACTATAAAAACATGTCCACAGATAGAGGTTGGAAAGTATTGTGGATGACCGAACTCAAGAGACTCAAATACATAGATAGAAGTACTAATAAACTGTGTAATAccactgcttttactactgttgatgtgcAGTCTTCTTGGATTCTAATTTAGACGTTGAGGAAGCTGTTCTTTCCAAATTGGAAATCTGAAAGTGGGAGCGTTCAAGTTGAAATTTCCAACTGGGAAATAATGAAATTCAaatattacatacatttatttaagacGGAGATTCTCAGATGCTGCTGAACAAGACTATTTACAACCCTTCCATTTCCTTTTACTGAGAAATTGCAGGAAAATAATGATAAGTTCGGCTTTCATCAAACCAGCCAGTTTATAAAACTAGAGCaatattttaacattgtaaCAGAAAGgctataaatattcatgagtcTTACCGGATGGTGTTACTTTAGCTCAGTATGATGTGCTGTTAGCAAGCTAAACAGAGTTGAATCAGGTCAGCTTTTAGCCTTTCCCCTGCTACCTTCCCCTGGTTTGCCTTTCTATAGTCTTACAGCTAAATAACATAAGCCAGCACTTTCCTGATTCTTACTGATGTGTGTTTAACTCCAGTTTTGTAATCATGTGAGAtagaccagttttttttttttttttttttttaacgctaCTGTTAGCGCTTTTAGCACAGTGCGATTCCCTACTTCCTCATGTGCAAACTTTGAGCTTCTCACCTGGAGACACTGGCGACGAGAAAGGCCAGTAATATGCCAAggaaaatacattttgtcattCAAAAATCCAAAGTCTAATTTTGAATGATTGCCTGCAATTGTTTCCTGAATTTAATTTCATTAGGTTGTGTGAGATGACAGCAGCTTTGTAATCAGTTATGCACCTGCTGTTTGAGCTTAATCCTCTTATTTAAATCCAAAATGTTCACTAAAAGAGAAGAATATAGTCTAATTGTTTTAGTGATAAATGCATTAAGAGTTTCCACTGCAGGTACTtcagttgttttgttgtttttttttttttatttcagtgaagTAAATGTTTACCTGAATATGGATTTATGCTACTCTGCCCACCTCTGGAAACAATTCAGCTCAACACTGAGACATTTCTAAAGTGCTACAGAAAAGGGTTAAGAACCTAAACATTTGAATTTACAGTGCAAACATGGCCGTACAGACGAATGCCGTGTACATTTTCATTGTCTGAAGAGTGATTGTTTGATTGTTGTAAAGAGGGTGTCCTGCAGGGCGGGGCATCGCGGCCTTGGTAAAAGAGGGGATATGAGGTACCTGGCCAATGGCTGCATTTGTAAtggatataatataaatatcattTGAATTTCAGCACTTTATACAGACCCTTAATATCCAGTTTACCTTTACAAGTATGACTAACACTGAGGCAAAAAATAACCGAAGagatatcatttatttttaatattcccAACCGTCTATCTTAATTACTCCTTAGCTTGGTAGAACTTCcctttaacactttaactttaactataCACACACGTGTACCTATATGTAAACTCACTATTACATCTCCACTGTTCGTCTTCCTCTGTGAGAAAGGAAAGTCCTTGGATGAAGAAGTATCTTAACAGGGTATCAACCACATGGTTCCAATCATCCAAACTCACAGATGCTTAAGCAAAACACAGATGCTAATGTCTTAAATGGATCAAATGTATTATACAAATGTATCTTCAAATGAGATTGGGTTGGAGGACAATGTGGGTATTTATCTTAAATTTGATAAAGCTCTTTATTACTATAAAATCTTCAGATTATCCAACTTCTCCACAAACTTGGATGGATTTTCTTTCTCCCAGGTTGATACCGTGGATTTGTCTGAGATGCACATCATGAAATGATAagagattcattcttctgaCCAAATCACTAAACACTTTAAGCAAAAATGCTtcactgtatgtactgtaaatgtACCTGACCTGTATTTAAAGCCAGTTACGTGTATTAACCTGTAAAATCTACTGTGTACATAAATAGACATTTTGTGAGCTCAAAAGAGAGTGAAGAAcgaaagaaaggaaaatattGGAGATCGCAAATTAATATCCCATACACTTACTACAGTAATAAGACACTGGAGGCCAGTATGGCAAGAACGAagtgaaacattttaattagCTACCTTCCCAGCTACTCTTTCCTGTGTTTGCCCTGTACTGCATTGTGAACTCTCCCTGCTAGCGACTCGCTGTCCGATATTCATGGCCCTTGTAAAAGTCAGGCCGCTTAACATCCCAGTGACCCAATTAACGAGCTACCAAAGAGGGAAAGTAGCACAAAATGATCACATCATTACTGCCCCAAGTGCTAAATTACATGGCCAAATATAGCTGGGAGCAGACAAACCCTTTACACTGGCTGTCAAATAAGTGAAGAGGATTTTCAAAACtggataaagagaaaaaaatcaaatactAAAAATGGTAAGAGGGGAATGCTAGCCTTCAGAGTAATTAGTATTAAGATTAAGACtcaatattaacaaaaatattttaatccagtattatataaatattataatccAGTACTTAATAAAAGCAGTACAGTATGATCAACCTTAAgacttaaaagttaaaaaagttttggaaaTATGGTCTAAAATTAGTTaaataaaagtaccaattaagCATATCAATCTcacattttgaaacattttgagTGCAACCTTTTAAAGGCCTGAGCTacatttagtatatatatatatatataatatatatatatatatatattatatatatatatatatatatatatatatatatatatatagatgatgTGATACTAATGTGCAGACCAGTGCAAACACAGTGATTCTACTGCATAATCaaatcacacacagcacatgTACATTCAGTCAGACCGGCATCCTTCTCCACTGAGCTACAGCGTagagacaaaacaacacttACGCCACTATTCACAAAGAGTTCACTCAGGAGTTATTTAAAGAGCTATTGCTGATGTTTCTCTTCCTCAGCCCGCacttctcagaaaaaaaaagcagatcaCCTGTCTCTGAATCTTCTTCTAGTGGTTTCTCTTTCAGCCTGTAGTTTGGTGTGTGACTACCTTGTGATATTCTTAAATAACTCAGGGGACAAAGCTTTGTGAATATGGCTCCTGTACCGCACTTCTTTAAACCTCCACAGAGACAGTGTGATAACTCGCCAAATCTGTGACACTGCAGAGAGAACATTAATGAggtgtaattatagaaatattttgtgatagtaatgagggacttgtaaaaaaaaaaaagaaaaaaaatacaaatattataaaaagatagattaaataaatgcataatgtgtcattttttttctttctgtaaatACTATGGTAAATAAACGGGAACTTGCACTGA

Function

GO: NA

KEGG:

id description
K12652 TBKBP1; TANK-binding kinase 1-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45899 lncRNA upstream 6539 3545453 ~ 3557491 (+) False G34105
TU45901 lncRNA upstream 14386 3545453 ~ 3549644 (+) True G34105
TU45865 lncRNA upstream 173453 3382988 ~ 3390577 (+) True G34078
TU45852 lncRNA upstream 244108 3319714 ~ 3319922 (+) True G34073
TU45751 lncRNA upstream 345688 3217004 ~ 3218342 (+) False G33987
TU45998 lncRNA downstream 143974 3802979 ~ 3804577 (+) True G34177
XR_455621.3 lncRNA downstream 194440 3853445 ~ 3861449 (+) True LOC103040174
TU46010 lncRNA downstream 194768 3853773 ~ 3860553 (+) False LOC103040174
TU46011 lncRNA downstream 205363 3864368 ~ 3868495 (+) True G34188
XR_002649846.1 lncRNA downstream 344478 4003483 ~ 4008413 (+) True LOC111192351
XM_007259175.3 mRNA upstream 164888 3392308 ~ 3399142 (+) True cdk5r1
XM_007259353.2 mRNA upstream 221340 3322964 ~ 3342690 (+) True LOC103043460
XM_007259142.3 mRNA upstream 381851 3126382 ~ 3182179 (+) True uts2r
XM_022668920.1 mRNA upstream 494199 2730484 ~ 3069831 (+) True cacna1g
XM_007259141.3 mRNA upstream 865994 2639255 ~ 2698036 (+) True spata20
XM_007259169.3 mRNA downstream 69411 3728416 ~ 3746114 (+) True tbx21
XM_007259164.3 mRNA downstream 118737 3777742 ~ 3781778 (+) True pnpo
XM_007259162.3 mRNA downstream 134870 3793875 ~ 3801538 (+) True cdk5rap3
XM_007259157.3 mRNA downstream 154091 3813096 ~ 3820968 (+) True nfe2l1
XM_007259158.3 mRNA downstream 154091 3813096 ~ 3820968 (+) False nfe2l1
TU45414 other upstream 1507156 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 1726454 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 2176011 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 2442158 1121801 ~ 1121872 (+) True trnam-cau_18
trnar-ucg other upstream 2442562 1121396 ~ 1121468 (+) True trnar-ucg
TU46176 other downstream 512046 4171051 ~ 4178083 (+) False G34309
XR_002649861.1 other downstream 2960665 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 2960666 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 3071949 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 3243412 6902417 ~ 6903997 (+) True G35021

Expression Profile