RNA id: TU45989


Basic Information

Item Value
RNA id TU45989
length 1243
RNA type TUCP
GC content 0.39
exon number 2
gene id prr15l
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3783125 ~ 3789192 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTACTCAAGTTGCAAAGGGCTGTCCCTAATGTTCAGCTTGGACTGCAACTCTTGTGGGAGGCTGCATCAGCTAGATAggctgtgtgcatgtgtgtgtgtatgtgtgtgtctgtgtgtgtgtgtgtaaatctgGCAGATCATGTCAACACCTGAGCACCAAATGAAAGCATTCAATCACAGTGAGATTGATTAAGAacggagacagacacagacagacaaccTTCAAAGATCTTGACAGAGACATTGTgcacaagaaaagaaaagaaaataaaagaaaaaagaagaaaaaaggaaacagcTGGTAGATGATACGTGCAGCAAACATCTGACTTCATGTGGACTTCATTCTGACTTCATCTATTCACCTGAAACAGGACTGCTTTTAAATCAGGCCTGCGATATTCATCCAGCCCATTTTCACGCGCCATGGCTGAACCTGCCTGGTGGAAGCTGACCTTCTCGAGGAAGAAGTCGTCTGAGTCCAAGGTCCTGTATGAAATCCCCGCAGAATATGGCAGCAACACTGGCAATAAAGAACTCTCCTACACAGATAGCACTGACAGCCAGCTAGATGCCAGGCTGGAGAAGATTGTGGACAAGTCTGCCAACAAAGGCCGTCACGTCAAAGTCTCGCACTCTGGCCGCTtcaaggagaagaagaagattcGAGCCACCCTTGCTGAAAATCCCAGTATGTTCCCAGAGTACAACAGGACTGATGAGAACCATGTGGTAGAGAAATAGAATCCACTCTACTAAACAAAAAGTGTCTTTCATCatcactcagacacacactccCGTCTGTTAATTAGCATGATGAAAGGAAAATACATGGGTTTAGAATGAAGATGAATATGTTGCTGcaaaacacacctgatccagccACAGGATCAGGAGAGTTCAAACTTGTACAAAGAAATGAAAGAGATTAATGAACAAAATCTCTTAATTTTATACGGGGTCTaatttaaaagctttgttttaaaaactctgtacgtctttatttaatttgaatatttaatTGGTCCAAGGTTTTGTTGCTCAGTCTACAAAGATACATACGAGCATTACTCCTCAAAACCcactttattttgtatatttagtattttttaggCTGGGTTCTTTTTAGGCTGGATTTTAGATGCTTACTGGTGTTTGTGCTTGTTAATACATGTTTTCATTGTGTGTAAAGCAGCATTGATGtggtaaaatactgtaaatgttaaataaatgaaactgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45973 lncRNA downstream 1667 3777900 ~ 3781741 (-) True G34166
TU45962 lncRNA downstream 54448 3728642 ~ 3728960 (-) True G34159
TU45895 lncRNA downstream 384295 3391629 ~ 3399113 (-) True G34101
XR_002649845.1 lncRNA downstream 593972 3107202 ~ 3189436 (-) True LOC111192350
TU45809 lncRNA downstream 698002 3060369 ~ 3085406 (-) True G34036
TU46051 lncRNA upstream 50811 3840003 ~ 3842727 (-) True G34218
XR_455620.2 lncRNA upstream 91390 3880582 ~ 3883412 (-) True LOC103038927
TU46069 lncRNA upstream 114142 3903334 ~ 3903569 (-) True G34230
TU46071 lncRNA upstream 121097 3910289 ~ 3910512 (-) True G34232
TU46077 lncRNA upstream 135250 3924442 ~ 3924669 (-) True G34238
XM_007259165.3 mRNA downstream 7223 3770639 ~ 3776185 (-) True mrpl10
XM_007259167.3 mRNA downstream 12916 3749171 ~ 3770492 (-) True LOC103044690
XM_007259172.3 mRNA downstream 228189 3545433 ~ 3555219 (-) True LOC103046317
XM_007259173.3 mRNA downstream 251019 3403947 ~ 3532389 (-) True myo1d
XM_007259176.3 mRNA downstream 392830 3382775 ~ 3390578 (-) True LOC103047433
XM_015608359.2 mRNA upstream 13720 3802912 ~ 3807018 (-) False LOC103042441
XM_007259159.3 mRNA upstream 13720 3802912 ~ 3806978 (-) True LOC103042441
XM_007259160.3 mRNA upstream 13720 3802912 ~ 3806976 (-) False LOC103042441
XM_022668923.1 mRNA upstream 34726 3823918 ~ 3829363 (-) False cbx1
XM_007259156.3 mRNA upstream 34726 3823918 ~ 3829329 (-) True cbx1
TU45820 other downstream 589031 3181168 ~ 3194377 (-) True G34046
TU45650 other downstream 1474079 2303262 ~ 2309329 (-) True G33904
TU45557 other downstream 1587313 2194757 ~ 2196095 (-) True G33836
TU45542 other downstream 1606349 2169023 ~ 2177059 (-) True G33823
TU45451 other downstream 1741134 2036125 ~ 2042274 (-) False LOC103022010
TU46045 other upstream 47429 3836621 ~ 3883469 (-) True G34214
XR_002649848.1 other upstream 1468690 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 2118782 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 2146643 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 2676176 6465368 ~ 6513701 (-) False LOC103026268

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00016659 True 369 mRNA 0.62 1 CM030122.1 26901376 ~ 26901744 (-)