RNA id: TU46069



Basic Information


Item Value
RNA id TU46069
length 236
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G34230
representative True

Chromosome Information


Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3903334 ~ 3903569 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


tttttttttttttttctaatttttcccattttctccccaatttacacggccaattacccaacccactcattaggactccccctatcaccagcgatgccccaacacaccaggagggtgaagaccaacacatgcctcctccgatacatgtgaagtcagccaccgcttcttttcgagctgctgctgatgcagtattgccgagcagccagcgcgcttggagaaaagcgcagcggctcggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_455620.2 lncRNA downstream 19922 3880582 ~ 3883412 (-) True LOC103038927
TU46051 lncRNA downstream 60607 3840003 ~ 3842727 (-) True G34218
TU45973 lncRNA downstream 121593 3777900 ~ 3781741 (-) True G34166
TU45962 lncRNA downstream 174374 3728642 ~ 3728960 (-) True G34159
TU45895 lncRNA downstream 504221 3391629 ~ 3399113 (-) True G34101
TU46071 lncRNA upstream 6720 3910289 ~ 3910512 (-) True G34232
TU46077 lncRNA upstream 20873 3924442 ~ 3924669 (-) True G34238
TU46079 lncRNA upstream 21912 3925481 ~ 3925690 (-) True G34240
TU46115 lncRNA upstream 99355 4002924 ~ 4003802 (-) True G34265
TU46159 lncRNA upstream 208812 4112381 ~ 4124821 (-) True G34298
XM_022668927.1 mRNA downstream 9969 3885324 ~ 3893365 (-) False LOC103038619
XM_022668926.1 mRNA downstream 9972 3885324 ~ 3893362 (-) False LOC103038619
XM_022668928.1 mRNA downstream 9973 3884272 ~ 3893361 (-) True LOC103038619
XM_022668925.1 mRNA downstream 9973 3885324 ~ 3893361 (-) False LOC103038619
XM_015608330.2 mRNA downstream 9982 3884014 ~ 3893352 (-) False LOC103038619
XM_007259143.3 mRNA upstream 184534 4088103 ~ 4097955 (-) True LOC103036928
XM_007259178.3 mRNA upstream 244619 4148188 ~ 4161856 (-) True LOC103021465
XM_022668932.1 mRNA upstream 315898 4219467 ~ 4440792 (-) True LOC103044368
XM_022668933.1 mRNA upstream 315898 4219467 ~ 4440791 (-) False LOC103044368
XM_007259180.3 mRNA upstream 688465 4592034 ~ 4703993 (-) True atrnl1
TU46045 other downstream 19865 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 114142 3783408 ~ 3789192 (-) False prr15l
TU45987 other downstream 114228 3783125 ~ 3789106 (-) False prr15l
XR_002649848.1 other upstream 1354313 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 2004405 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 2032266 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 2561799 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 2633452 6537021 ~ 6541364 (-) True G34953

Expression Profile