RNA id: TU46115



Basic Information


Item Value
RNA id TU46115
length 483
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G34265
representative True

Chromosome Information


Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4002924 ~ 4003802 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


taaataaataaacacaattttaaagaaaacgttcTGTTTCAGATATAGTAGGTTTCGTTCCAACAGCAACAATATGCCTTCCTCAACACTGGCCACAATCACtctgacaaaaacacacacacacacacacacacccacatccacacacacatacatacacacacactagaaGTACAGGTAGTAGGTCCAGTAGAGCAGGTTGATGAAGATGAAGGACAGGGGGAAGGTCAGACGGGAGTAGTTGTCGATGTAGTGCGGATTTTCCACATGGCAGCAGTTCAGGAAACACATGATGCGCCGTGCCACTGACAGGAACTTGGCGCAGCCGCTCTGGGGCTGGGAGGAGGTCTTCTCCTCTTTATTGTCACTGGGAGTTGGGCTGCTGGTGCTGCCGGCACGGGACAGCATCTCCTCCCTCCTGCGCGCCCGCAGAGCTGCAGCGCTGCCGATGGAGGTGACGATTCCGTTCATCTCATCCTCACG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46079 lncRNA downstream 77234 3925481 ~ 3925690 (-) True G34240
TU46077 lncRNA downstream 78255 3924442 ~ 3924669 (-) True G34238
TU46071 lncRNA downstream 92412 3910289 ~ 3910512 (-) True G34232
TU46069 lncRNA downstream 99355 3903334 ~ 3903569 (-) True G34230
XR_455620.2 lncRNA downstream 119512 3880582 ~ 3883412 (-) True LOC103038927
TU46159 lncRNA upstream 108579 4112381 ~ 4124821 (-) True G34298
TU46160 lncRNA upstream 111090 4114892 ~ 4124821 (-) False G34298
TU46158 lncRNA upstream 113552 4117354 ~ 4124821 (-) False G34298
TU46162 lncRNA upstream 129484 4133286 ~ 4135287 (-) True G34300
TU46182 lncRNA upstream 167251 4171053 ~ 4177653 (-) True G34311
XM_022668927.1 mRNA downstream 109559 3885324 ~ 3893365 (-) False LOC103038619
XM_022668926.1 mRNA downstream 109562 3885324 ~ 3893362 (-) False LOC103038619
XM_022668928.1 mRNA downstream 109563 3884272 ~ 3893361 (-) True LOC103038619
XM_022668925.1 mRNA downstream 109563 3885324 ~ 3893361 (-) False LOC103038619
XM_015608330.2 mRNA downstream 109572 3884014 ~ 3893352 (-) False LOC103038619
XM_007259143.3 mRNA upstream 84301 4088103 ~ 4097955 (-) True LOC103036928
XM_007259178.3 mRNA upstream 144386 4148188 ~ 4161856 (-) True LOC103021465
XM_022668932.1 mRNA upstream 215665 4219467 ~ 4440792 (-) True LOC103044368
XM_022668933.1 mRNA upstream 215665 4219467 ~ 4440791 (-) False LOC103044368
XM_007259180.3 mRNA upstream 588232 4592034 ~ 4703993 (-) True atrnl1
TU46045 other downstream 119455 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 213732 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 213818 3783408 ~ 3789106 (-) False prr15l
TU45988 other downstream 213860 3783125 ~ 3789064 (-) False prr15l
XR_002649848.1 other upstream 1254080 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 1904172 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 1932033 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 2461566 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 2533219 6537021 ~ 6541364 (-) True G34953

Expression Profile