RNA id: TU46158


Basic Information

Item Value
RNA id TU46158
length 1468
lncRNA type inter_gene
GC content 0.49
exon number 11
gene id G34298
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4112381 ~ 4124821 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTGCGATGCGAAAATTTGCCTGAGTCCCTGCAACAGTCTGAACCGCCAGGAAGCCTGTCCCCTGAGGTGTGATAGGCCCCCAGATAGAAGCACCACAGTGCATGTGTTCAGGAGTGTATTTAAGTAGGCGGTGGCGGCCATTATGGTCCTCAATATGGTAGAGCGGAATGGTCTGGAAACGTCTCCAGCCCAAAGACAGGATGAGCGGATCCCGGGTTTTTAGAATACGGTTAAACCAGCGATGTTTCTTCAATCGCATCTGCAGATAGCCAATATTGCCTTCACTGGCTCCCAAAGCACCGAGAATGATGGGATAGTGAGGGTCAAAGTTTGTGACAAATTCACACGGCAGGCCAGGAATCTCTAGACGCACATACATGCCAGGCCTGAACCCCTCGTACTGAATCCGAGCCTCATCATCCATGTCCTCAAACTCAGCCCTGTTCAGCTCAGCCTGTTTCTGCATCTCCTCCTTGAGATCATCAAAGTATGtagcatcagcatcatcataTTCTGCATCAAATCTCTCCTTCAGTCTCTTCTTCCTCTCCAGACGCTTGTTCTTTTTAGCTTCGTCATCATCAAATTTCACTACGACggcctcttcttcctccttttcttcatcttcatcatcatcatcctcCTCAGCTTCATCTCCCATCGCTTTGTGGACCTCTCCAGTTTCCAAGTCTTCAAAGTCTCCATAAACCTCATCATCCTCTTTAAGTAGAGTAGCAGCATCTTTGTCTCCCTCCCATTTCCCGGTGACAAAGCAGTCCCTTATAGAGGTCAGCATCTCCTCGTCTTCCCAGTCGTGCCCGGCGTCTGGATGGAAGCGTGAGCAGTCTACAGCATCTGCTCTGACTTTCTTATTCTTCTCAGGTCGGGTAACTCGGAACAGACCACCCAGCTCCTCATCCTCCTTGTTCTGTgcatcctcttcctcctccaccaCTGTGCCATACACCAGCTTGCGGAGGTTAGGGGCACTTCGCTGACGCTTCAGAAAGGCTTCTGTTGCCTTTTGGGCCAAATTTGACTTCCACTGTAGTGCTCCTACAGTATCAGCTCCCAGCTCTGCTTCCTCTTCCTCAAGCTCATCCTCAGCATCcattttctcctccttttcctctttttcttttttctttggcTTTAAAGCAggtgttttaatatttacttgCTGTTTCTTCTCTGATTCATCTTCTtcctcatcatcattatcatcatcatcatcatcatcatcgtcgtcgtcctcctcctcctcgtcatcctcatcatcatcatcatcatcatcatcatcttctcctgcactctccatctcttcttcatcctcttgATCAGATTCCTCTTCATCACTTTCTTCACTATTGtcgtcctcctcttcctcagtgAAGACAgctttcctcctctctctctgagtctctgGATCCCACACTCGACTCTCCACAGGGCCCTGCTTTACACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46115 lncRNA downstream 113552 4002924 ~ 4003802 (-) True G34265
TU46079 lncRNA downstream 191664 3925481 ~ 3925690 (-) True G34240
TU46077 lncRNA downstream 192685 3924442 ~ 3924669 (-) True G34238
TU46071 lncRNA downstream 206842 3910289 ~ 3910512 (-) True G34232
TU46069 lncRNA downstream 213785 3903334 ~ 3903569 (-) True G34230
TU46162 lncRNA upstream 8465 4133286 ~ 4135287 (-) True G34300
TU46182 lncRNA upstream 46232 4171053 ~ 4177653 (-) True G34311
TU46218 lncRNA upstream 337056 4461877 ~ 4509252 (-) True G34342
TU46259 lncRNA upstream 461624 4586445 ~ 4586858 (-) True G34381
TU46263 lncRNA upstream 502861 4627682 ~ 4628175 (-) True G34385
XM_007259143.3 mRNA downstream 19399 4088103 ~ 4097955 (-) True LOC103036928
XM_022668927.1 mRNA downstream 223989 3885324 ~ 3893365 (-) False LOC103038619
XM_022668926.1 mRNA downstream 223992 3885324 ~ 3893362 (-) False LOC103038619
XM_022668928.1 mRNA downstream 223993 3884272 ~ 3893361 (-) True LOC103038619
XM_007259178.3 mRNA upstream 23367 4148188 ~ 4161856 (-) True LOC103021465
XM_022668932.1 mRNA upstream 94646 4219467 ~ 4440792 (-) True LOC103044368
XM_022668933.1 mRNA upstream 94646 4219467 ~ 4440791 (-) False LOC103044368
XM_007259180.3 mRNA upstream 467213 4592034 ~ 4703993 (-) True atrnl1
XM_015608360.2 mRNA upstream 505421 4630242 ~ 4703993 (-) False atrnl1
TU46045 other downstream 233885 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 328162 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 328248 3783408 ~ 3789106 (-) False prr15l
TU45988 other downstream 328290 3783125 ~ 3789064 (-) False prr15l
XR_002649848.1 other upstream 1133061 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 1783153 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 1811014 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 2340547 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 2412200 6537021 ~ 6541364 (-) True G34953

Expression Profile