RNA id: TU46174


Basic Information

Item Value
RNA id TU46174
length 727
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G34309
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4171051 ~ 4178083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTGATTATtactgttaatcattcaatattcatcctgttaatcattcaatcagTATGTTATCATTGATTTTATGTGAACTGTGTATTCTCTGCTCCTGGGACATACAGGCTCAGATTTGAGGCCTAAAGAGATGAAAATTGAGTTCTGGCCTGGGAGACTAGCGGGTCATAGCAAATGGTGTTTTCTGATTCATGAATTATTCTCTCCTCAAGGAATGGAAAATTTAAGTTTGCCTGGAAACTGTCTTGTCAGAGTAAAAAAGAGTTTTCTGATTTGTGAattattctctcctaaaaagcttATCTTCTGTTGTACGTGCAGTTTTCTGTTCCTCTTTTTATATCTGGTAGGGACCTGTTCCAAACAGATCACGTGGACATTACCTCATGTATGAACGAGGACTGTATAAAAATGCCCAGTCGACACAGAAAGGGGCTTTTTCCGACTTTCCTGACTACTCTCATTCTTCATCCATTGCTTTTgctttatttctgctttttgcaacttcaaaataaaaaccttctcTTTTTGGCATCCCGGCTCGTTGACTGTCTTTGTCGATTTCCACGACAGGTTGAAAAGCACTATGAGGGAAAGTTTGAGGGAAAGTCTCTCACAGGCTGTGAAGCAGCATCCAATCACGCAcggcatactctcaaccagaaatgactgtccacctggaggactccATCAGGCACTGAGGACAAAGTACCAATACATATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46144 lncRNA upstream 32898 4137755 ~ 4138153 (+) True G34288
XR_002649846.1 lncRNA upstream 162638 4003483 ~ 4008413 (+) True LOC111192351
TU46011 lncRNA upstream 302556 3864368 ~ 3868495 (+) True G34188
XR_455621.3 lncRNA upstream 309602 3853445 ~ 3861449 (+) True LOC103040174
TU46010 lncRNA upstream 310498 3853773 ~ 3860553 (+) False LOC103040174
TU46222 lncRNA downstream 405912 4583718 ~ 4583977 (+) True G34345
XR_002649847.1 lncRNA downstream 527107 4704913 ~ 4708973 (+) True LOC111192352
TU46272 lncRNA downstream 596080 4773886 ~ 4774852 (+) True G34393
TU46273 lncRNA downstream 597215 4775021 ~ 4775341 (+) True G34394
TU46275 lncRNA downstream 646537 4824343 ~ 4827906 (+) True G34396
XM_022668931.1 mRNA upstream 38080 4108457 ~ 4132971 (+) True bms1
XM_022669410.1 mRNA upstream 65298 4103372 ~ 4105753 (+) True LOC103043774
XM_022669409.1 mRNA upstream 65298 4103372 ~ 4105753 (+) False LOC103043774
XM_022669408.1 mRNA upstream 65298 4103835 ~ 4105753 (+) False LOC103043774
XM_022668930.1 mRNA upstream 100319 4039157 ~ 4070732 (+) False LOC103037237
XM_007259179.3 mRNA downstream 349139 4526945 ~ 4570849 (+) True LOC103022011
XM_007259188.3 mRNA downstream 621297 4799103 ~ 4819304 (+) True LOC103024286
XM_007259189.3 mRNA downstream 651232 4829038 ~ 4832548 (+) True LOC103024595
XM_007259192.2 mRNA downstream 704750 4882556 ~ 4924684 (+) True LOC103025551
XM_007259195.3 mRNA downstream 753609 4931415 ~ 4937026 (+) True twnk
TU45414 other upstream 2114177 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 2333475 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 2783032 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 3049179 1121801 ~ 1121872 (+) True trnam-cau_18
trnar-ucg other upstream 3049583 1121396 ~ 1121468 (+) True trnar-ucg
XR_002649861.1 other downstream 2441864 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 2441865 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 2553148 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 2724611 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 6295568 10473374 ~ 10474792 (+) False G35744

Expression Profile