RNA id: TU46450


Basic Information

Item Value
RNA id TU46450
length 309
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G34536
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5143748 ~ 5144056 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtaaaattacataaatgttacaatttaaagggcttttattttaaaatgacacatcaaaatgttctgatagtaattgagtgaaacatacaagtagtgtactatcaggactatatgaaattgaactgtgatatcagacagatttattttaataacagtctaaacattgtgtaaaattacataaatgttacaatttaaagggcctttattttgaaatgacacatcaaaatgttctgatattaagtgagtgacacatacaagtagtgtactatcaggactatatgaaattgaactgtgatatcagacagattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46449 lncRNA upstream 413 5142981 ~ 5143335 (+) True G34535
TU46448 lncRNA upstream 8094 5135399 ~ 5135654 (+) True G34534
TU46440 lncRNA upstream 18458 5107810 ~ 5125290 (+) True G34532
TU46399 lncRNA upstream 87396 5054363 ~ 5056352 (+) True G34500
TU46387 lncRNA upstream 164336 4978747 ~ 4979412 (+) True G34489
TU46451 lncRNA downstream 366 5144422 ~ 5144636 (+) True G34537
TU46452 lncRNA downstream 750 5144806 ~ 5145185 (+) True G34538
TU46453 lncRNA downstream 2020 5146076 ~ 5146587 (+) True G34539
TU46469 lncRNA downstream 20610 5164666 ~ 5165607 (+) True G34552
XR_002649854.1 lncRNA downstream 65412 5209468 ~ 5299021 (+) False LOC111192354
XM_022668936.1 mRNA upstream 44045 5087009 ~ 5099703 (+) True LOC103044692
XM_007259205.3 mRNA upstream 65836 5070053 ~ 5077912 (+) True LOC103029028
XM_007259204.3 mRNA upstream 90243 5030807 ~ 5053505 (+) True thbs2
XM_007259200.3 mRNA upstream 172413 4967574 ~ 4971335 (+) True chac2
XM_007259208.3 mRNA downstream 3284 5147340 ~ 5158697 (+) False aldh18a1
XM_007259209.3 mRNA downstream 3284 5147340 ~ 5158697 (+) False aldh18a1
XM_007259210.3 mRNA downstream 3285 5147341 ~ 5158697 (+) False aldh18a1
XM_015608381.2 mRNA downstream 3464 5147520 ~ 5158697 (+) True aldh18a1
XM_015608399.2 mRNA downstream 429409 5573465 ~ 5579442 (+) False zdhhc6
TU46176 other upstream 965665 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 3086874 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 3306172 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 3755729 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 4021876 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 1475614 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 1475615 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 1586898 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 1758361 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 5329318 10473374 ~ 10474792 (+) False G35744

Expression Profile