RNA id: TU46456



Basic Information


Item Value
RNA id TU46456
length 264
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G34541
representative True

Chromosome Information


Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5143072 ~ 5143335 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ttgtatgtttcactcacttaaaatcagaacattttgatgtgtcatttcaaaataagggccatttaaattgtaacatttatgtaattttacacaatgtttagactgttattaaaagaaatctgtctgatatcacagttcaatttcatatagtcctgatagtacactacttgcatgtttcactcacttaaaatcagaacattttgatgtgtcatttcaaaataaaggccctttaaattataaaaacattttatttcaacacaatgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46433 lncRNA downstream 64224 5078535 ~ 5078848 (-) True G34526
TU46409 lncRNA downstream 169981 4971699 ~ 4973091 (-) False psme4
TU46405 lncRNA downstream 171978 4967601 ~ 4971094 (-) True G34505
TU46374 lncRNA downstream 182149 4959388 ~ 4960923 (-) True G34477
TU46370 lncRNA downstream 189071 4943900 ~ 4954001 (-) True G34475
TU46457 lncRNA upstream 389 5143724 ~ 5144056 (-) True G34542
TU46460 lncRNA upstream 6975 5150310 ~ 5150963 (-) True G34544
TU46458 lncRNA upstream 8037 5151372 ~ 5152413 (-) True G34543
TU46475 lncRNA upstream 47698 5191033 ~ 5193859 (-) True G34556
TU46666 lncRNA upstream 247760 5391095 ~ 5391320 (-) True G34682
XM_007259206.3 mRNA downstream 17874 5099991 ~ 5125198 (-) True entpd1
XM_022668935.1 mRNA downstream 30104 5099968 ~ 5112968 (-) False entpd1
XM_022669430.1 mRNA downstream 147159 4971698 ~ 4995913 (-) True psme4
XM_007259194.3 mRNA downstream 212365 4927516 ~ 4930707 (-) True mrpl43
XM_007259191.3 mRNA downstream 264313 4870049 ~ 4878759 (-) True mfsd13a
XM_007259207.2 mRNA upstream 17573 5160908 ~ 5163466 (-) True LOC103029658
XM_007259211.3 mRNA upstream 20615 5163950 ~ 5165625 (-) False LOC103030716
XM_022669411.1 mRNA upstream 20615 5163950 ~ 5165617 (-) True LOC103030716
XM_007259213.3 mRNA upstream 112284 5255619 ~ 5362472 (-) True tcf7l2
XM_007259215.3 mRNA upstream 112284 5255619 ~ 5362471 (-) False tcf7l2
TU46045 other downstream 1259603 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 1353880 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 1353966 3783408 ~ 3789106 (-) False prr15l
TU45988 other downstream 1354008 3783125 ~ 3789064 (-) False prr15l
XR_002649848.1 other upstream 114547 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 764639 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 792500 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 1322033 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 1393686 6537021 ~ 6541364 (-) True G34953

Expression Profile