RNA id: XR_002649853.1


Basic Information

Item Value
RNA id XR_002649853.1
length 2942
lncRNA type inter_gene
GC content 0.43
exon number 7
gene id LOC111192354
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5209468 ~ 5299021 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTTGTTTGTTAAGCTAGTTAACCTAAAGCTAACCAGCCAACATCTCTGACCTGCAGAGAAAGGTCTAAATTGCCATTATCTGATAAAGTCCATCATCTCATCAGTGCTCATCTTTACACGCTCAGCATCTCCAGAGCAGGCAACTGTCACCATGGAGACACCGCCATTCTTTTGCTCATGTGAGGAGATTAAAAGTGCTCTGCCCATTACTGACTGGTACAAGCCCTGAGACTTGAATGGATGGACAGCCATTATGAGAAGAAGAAGATACCTTCTTCATTTAGACCAGCTTTTTCTTCAAGGCTGCTGCAAGAACAGAAGCTCACCTTTCCCACAGAAAAACCCTTGGATTATGACCaggaGTTCATCTACTGCTTTGAAGCCATGTGTTCATGGTGGAATTTGAGAAAGAAGACAGCAGCAGGACTCACAGACAGCTGTGTCCTTATTGATTTGTTCCTGTGAGGCAGTAGCAGTTCAGCACTCACAAGGAAAACATCTGAACAGTGACTCAAACAGTACATGCACAGGAGAAAGGGGAGGACAATtcggagagacagagagatgaacAGACACACAGATGCCAGACGAGGAGACTACGAGAGGAAGATGAGGAGAAAAGTAATGACGAGAGGGGAGTGAGGGGAACCGCCTCTGAGGCTCAGAGGGACACAACCAAAGAGGTGGTGCGCTGGTTGGAGTCTGGGTGCAGAGAGGGGTGTTACATGAGCCCTGCGTGCTAAGGCCCTGCATACTAAACTCTACAGCCCAGCTTACATGCAGTTCTTACGGCTTACGGCAGGGGAGCCCAGGCACAAACGGCTGGATGGCTACTGTCCAGGAGGTAAGAGCTAATTCTGAACACAGAGATCATAAATACGCACTCTGTCTTTCATTTCTGTctcgttttttctttcttccttttttctcttttatttttcttttgcccTTCTTTCCCTAGCTCTATTCtctattgtatttttctttcgTTTCGTTTTAAATTTCTCTgtcccttttctttcttttttctctaattgcttttctgttttccttccccttctctctcttttctctccttcccccttctctcgttttctctcctAACCTTctgacagaggaaaaaaaaacacaattaatgaAGACTTCTCCCAGTGTTCATTATTTTTCCAAGAGGCAGGTGACAGTGCAGCGGTCTgatgcgtgtatgtgtgtgcgtgcgtacACGCTACAGTTTTTGACACAAACATGCTAAAGCACCTTCCCTGCATGCAGACAGGAGACCACCACCTATTAATCTATGCTAATTCAATTACAGATTATCAAAACACATTAGCTTTTCTCCAGCCCAGCTCCAATCCCCCTAGCCCCCATTCAACAGATTCAATTAGGCAGGACTGGAAATAGGATGATCACAATATAAAGGGCTCATTAGGGGGGAATTAGCTGTCACTTAAGCCCAGGTCCACTGGAGGCTggtgcagaagcagcagcagcgtctGCAGGCACAAGCAGACACCTGGGTGTGGAGCTAGCAGAGCTTAGCCAGCCCCAGCAGGCCTCTGGAGCCATGCGCCTGCTGCTGCTACACGTAACACATGCCAGGTGGAGTACCACTGGTAAGGGGCAGCTGTACTGGcatcacagtttttgttttatgtaatattttgtagTGTTATGCTGTATTGCTATTTCAGTGCtgttatgttattttaaagcatttctattgccATATTCCAATTATgccaaaacagcaaaaatagatATACAAGGTTTTTACATGGCAGCACTGATTTCCTTCTCCTAAACTTTAGATTTAGGCTAATGTTTAGTACGATGGTTAGCAATAAGGTCAGTATTAtattttcaccttttagttGAGGTTAAAGTTAAGATTGAGGCTTTAAGTTAAAGTTAGGCTCTAGATTCTGAGTTAAGCATAAGGTTAGGCTCTAGGCTTTGTAGTTGTATTTGTAGTTCGGGTTTGGATTAGGATTTGGGTTAAGACTTGGGGTAGGATGATCTGGGACTTTTTGATAATTAATCAAAACCCATAATCAGAATCTTTAAATCAACTTTATCTTGCCCATGTGGgatctatatttttttattgcgtCCCACACTGTATGTAGCCAAAAAAAAGAGGTTGCAGAACATGGAAGACAGTACTGTTAAAGCTGGTAATGGGTTTTTGGTCAGCTGTTGGAAGATATTTCAGTATAGTTATTTTATACACAGCAACCTTGGGTCAGGCTTTATGTGAGTTTTAAACACAATCACACATAGACCCGCTCTACTCCTTTCTTTTGCTCCCTTGCTCGTACTTATCCATTAATATCCTGTGGCTCTGCAGGACCAGCCCTCCTAAGTTGCCTTTCCAATCACATTGCAATTAAATAGAAGTTTGTGGCTGTCTAGAGTGGTGcttctataaactaaagaccAGGCCTgactctttctccctctgctTTTAAATTTCTCTTTTCACCACCACTACCACTGAGCTAAGCTGAGGGTGAGATGCTGCAGGACTGAGGAGTGGGTGGCGGGAGCCGCCATATGGAATGTTTTGCGTTTTCCAGCAACTCTTTTGTTTTTGAAagacattaaaaacaacaaaccaTAAGGAGATTTGTCATCCACAGTTAACCCCTCCTGCTTCACACAACACAAGCAGCTACGAACCCCCAGGGAGCATTCGCAGCGACAGGAAAAACAAACATGCTCTTTTTCTTTCGCTCTGTTTCAGACAGATGTACACATAGTCCTACAAATGCTCTCTTGGGTGCATTTGTGTCCAGATCTCCACTTTAGCTGGACTCTAAAGGCCTCCACAAAGCTCACTCAgggtccaaaaaaaaacaccagcccCACAGCCTTTAGTGCTCAGCAATGGattcatttacttatttattgtgCAGcactatcaaaaaaaaaaaataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46469 lncRNA upstream 43861 5164666 ~ 5165607 (+) True G34552
TU46453 lncRNA upstream 62881 5146076 ~ 5146587 (+) True G34539
TU46452 lncRNA upstream 64283 5144806 ~ 5145185 (+) True G34538
TU46451 lncRNA upstream 64832 5144422 ~ 5144636 (+) True G34537
TU46450 lncRNA upstream 65412 5143748 ~ 5144056 (+) True G34536
TU46501 lncRNA downstream 114880 5385883 ~ 5386178 (+) True G34580
TU46514 lncRNA downstream 129952 5400955 ~ 5571681 (+) True G34587
TU46543 lncRNA downstream 387966 5658969 ~ 5659199 (+) True G34605
TU46544 lncRNA downstream 388263 5659266 ~ 5659902 (+) True G34606
TU46540 lncRNA downstream 421537 5692540 ~ 5711855 (+) False dnmbp
XM_007259208.3 mRNA upstream 50771 5147340 ~ 5158697 (+) False aldh18a1
XM_007259209.3 mRNA upstream 50771 5147340 ~ 5158697 (+) False aldh18a1
XM_007259210.3 mRNA upstream 50771 5147341 ~ 5158697 (+) False aldh18a1
XM_015608381.2 mRNA upstream 50771 5147520 ~ 5158697 (+) True aldh18a1
XM_022668936.1 mRNA upstream 109765 5087009 ~ 5099703 (+) True LOC103044692
XM_015608399.2 mRNA downstream 302462 5573465 ~ 5579442 (+) False zdhhc6
XM_007259232.3 mRNA downstream 302506 5573509 ~ 5579442 (+) True zdhhc6
XM_007259235.3 mRNA downstream 302509 5573512 ~ 5579442 (+) False zdhhc6
XM_007259243.3 mRNA downstream 325078 5596081 ~ 5607391 (+) True LOC103039360
XM_007259244.3 mRNA downstream 325078 5596081 ~ 5607391 (+) False LOC103039360
TU46176 other upstream 1031385 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 3152594 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 3371892 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 3821449 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 4087596 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 1348667 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 1348668 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 1459951 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 1631414 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 5202371 10473374 ~ 10474792 (+) False G35744

Expression Profile