RNA id: TU46543


Basic Information

Item Value
RNA id TU46543
length 231
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G34605
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5658969 ~ 5659199 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCTAATAAGCAATTAACTACAAAAGACCAGAATGGTAACAACACTAGGTACCAGTGCCATTCTCTATATAACCATATCTTTCTGTCTAGTGCATTTCCTTAAGCTATTATATAATACACATTTGTTTCAGTTCCCACTGACATTTGTCCTTCTCACATTTCTTAACAATCACTTCCTTTCTATGATTCTCTGCTAGTGATCAGAAAATGTGACAGTTCTATGAACTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46514 lncRNA upstream 87288 5400955 ~ 5571681 (+) True G34587
TU46501 lncRNA upstream 272791 5385883 ~ 5386178 (+) True G34580
XR_002649849.1 lncRNA upstream 398586 5209468 ~ 5260383 (+) False LOC111192354
TU46544 lncRNA downstream 67 5659266 ~ 5659902 (+) True G34606
TU46540 lncRNA downstream 33341 5692540 ~ 5711855 (+) False dnmbp
TU46556 lncRNA downstream 80415 5739614 ~ 5742444 (+) True G34615
TU46539 lncRNA downstream 129559 5788758 ~ 5793818 (+) True G34602
TU46590 lncRNA downstream 185703 5844902 ~ 5847925 (+) True G34636
XM_007259239.3 mRNA upstream 5292 5642317 ~ 5653677 (+) True LOC103038312
XM_022668950.1 mRNA upstream 17174 5615695 ~ 5641795 (+) False gpam
XM_022668951.1 mRNA upstream 17174 5618006 ~ 5641795 (+) True gpam
XM_007259243.3 mRNA upstream 51578 5596081 ~ 5607391 (+) True LOC103039360
XM_007259244.3 mRNA upstream 51578 5596081 ~ 5607391 (+) False LOC103039360
XM_007259238.3 mRNA downstream 9868 5669067 ~ 5684163 (+) True cpn1
XM_022668955.1 mRNA downstream 33323 5692522 ~ 5756116 (+) True dnmbp
XM_022668956.1 mRNA downstream 98873 5758072 ~ 5764882 (+) True LOC107197899
XM_022668957.1 mRNA downstream 106657 5765856 ~ 5771877 (+) True LOC103045303
XM_022668960.1 mRNA downstream 147963 5807162 ~ 5819997 (+) False casp7
TU46176 other upstream 1480886 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 3602095 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 3821393 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 4270950 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 4537097 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 960471 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 960472 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 1071755 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 1243218 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 4814175 10473374 ~ 10474792 (+) False G35744

Expression Profile