RNA id: TU46556


Basic Information

Item Value
RNA id TU46556
length 2809
lncRNA type intronic
GC content 0.42
exon number 2
gene id G34615
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5739614 ~ 5742444 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTAAGAATCCAGTTAGTTTGATTGCATTTGAAATGTTACtgtgattaaattttttttctatagctAGTTTGATCATGgattgatatatttttaaataaaaggctATTCTCAGAAGCACCTCAGCAAAAGCCTGGGCTGAGTGTGGAGATGTGGAAAGGTCACCATAATGAAAGATCCCTCTGATCTTGATGGAATTTGGAGTAATTAGTTTGGGCCACTTATTCTGGGAAGGATCAGTCATTCTGAAATGATGGTCCAAACCTGTTCAAATCACATTGTCACTGATCTGCTGATATCCCTTTAAAACAAAGGTTTGGAATGTGACCTGAACTATTACCCTGAGAAAATGTAGTGTGAATATATGCCGTGCTGGAGCAGACCATCTGTATGCAATATATTAATCCTATAATTCACTTTAAGTGTATCTATTCTATTTTTGCatgacttgattttttttatataaaattatacatattatatataaaaagagttttttttgtatagatAAAGTCTCACATCTATAGAGAACACACAACACATAAAATCCATGCTTTTGTTTAGTGCCTGAACCTTCATGACCAGGGAATAATGATTTATGACCATCATTGCATTGCCTGGTTATGGGGTCAGGTTTTTGCAGGACCACCCCTGCAGTGCCACCACTGGGAATGGCCCATTTCTGCCCCTGGAATATGATGTAGACTGGTAGGACCAGCATTGTGGAAGGAGACCAAACACAGTGCCACAAGCGATTACTTCCACTGCACGTCAACAGATTAgagtgagggggagagagaggccTTTTGTGTGCCTGTCTGAGATTGCCCACTCAACTATTCACCAGCCCATGGCACACATACGTTACTGTCAGAGCCCTGGCACCATTTCTGTAGCTTTACCAAGTCCTCGTGTAGCACTCTTAACCCAGGAATGCACTCACATACACATAGATTCAGTGAGAGTACTAGAAACACTATATCCCTAAAACTACAGGAGCCAAATGAATTGTTTGGAGAGATGCCATGAAGCTAGTTTTAATGAAATTTTGATGGATGGTTCTtttttaaatggcaaaagaTAGCATGAAGCTTATTAGCTAAAGTGGACTTTAACATATTAAGTGTTTCTGCAACAGATTTCAGACTTCAGAGTGACTCCAAGCACTGTAGAGATTTATTAGGTTGCACAGCGCACCCCACCTCATTTTTAAAGTTATATCTGTCAAAACTAGGGTTGTAagaatatatcatatattaaagtattacaatattttgtttttacaatactgtatcaaattttaaaaacacaatattgatGTTTAAATATTCCTTTACATGTAAAGTTTTGTTGTTCTAGACCACTAGAAAGCAGTGTTTTACTCAAATTCTATAAATATGATAAGATATGATCCtcaaatttgattaaaatagtCAAAATAGCAGTATGTCACCTTACTTACAGTAtctcaatatattgtgatatattgaatcgTAACACCTGTGTTATGATATGCTAATACACAGCCATAATTGAGACCACAGAAAGTCACAGTAGATCACACATGATTGATAGCATGAATTTGCATAGACAAAAGCTCCCACACTTTAGACAAATGTTTGCCACCGCTCCTGAAAACATTTCTATAGTAACAGTGATTTGATTTTAATATTGTACATGATCTGTTAGTTGGACCTTCCCTATtgcataataatatatttttcagcAACTGACTGGACTGGGTGGATATAAGTTTGAGTGCTGCGAGTTACATTTCATATGAGAGATTTTAAATGACTCAACTCCTAGTTTCTAAACATCCTTGTCCAGCTCATGTTTTCCATTCTTCAGAAGTGGATGATTAGTAAAGCAGGTGAATGGCTGATTCCTGCTTGCATTCTTACAGTCACTGAGTCACTAGTAGGAGTGAAGTTCCTGTCTGCTTGTGTGCTCTTTTGTCTTCAATGGATTCTTTGTCTGCTTTTTTTATAGCTTGAGTCATTCTTAAAGTTTGGTGTTCCTTAAACTTAATTAACTAGTGAAATAATTGATGAAAGCAGACTGATAGAttttgatagattttttttgctgtcaTAAGTAGGTCAGAACAGGTTGTATTGTTcagtgggtgtgggtgtgtgtgttctgtgtatatatatgacgtacagagagaggggggggaaCAGAGGGAGctgttttgcttgtttctgaAGTTCATGTGAAGTGAGGCACTTAGCTCATGGGTGGGTGAAGCAATATAGTGCGGGCATCTGTTCCTCTCAACATAATAGATGCATGCACAGTTTGATAATTTATTACGAATACTGAGAGATTGTCTGTCTCAGAAAAGAAGCAGTTATTAATTGTAGTGTACATTTCTACTTTTGCAACTTGAATATTTATTCTGTATCAAATTATGCATTGATTCCAGCACTGTAAATAGTATGTCTGTTAGAAGTGTTAAAACAGTTTACAACAGATATTGGTTAGCATCAATGTTCACAAAGTATGCCCCATATGTTTTTTCAAAACCTTATTTAAGTAAGTATGGCTGATCTGGTCaaaaacaatatcacaatattatatataggcAATATTATATCTATTAAACATATTGTTACAGTTTGTTATTAATTAGCACCTAGGTTCTCTTGATAGGCCACATATGTTTTCAAAACCTAATTGGAAAGTAGGCCTtaataatattgccaaaaatTACATCACAAATCAGTTTTATTAATTCTGGTTGATTCAATATATTTCCGATATGGATATGAACAATACACACAGACATAGCCAGGTTACTGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46540 lncRNA upstream 27759 5692540 ~ 5711855 (+) False dnmbp
TU46544 lncRNA upstream 79712 5659266 ~ 5659902 (+) True G34606
TU46543 lncRNA upstream 80415 5658969 ~ 5659199 (+) True G34605
TU46514 lncRNA upstream 167933 5400955 ~ 5571681 (+) True G34587
TU46501 lncRNA upstream 353436 5385883 ~ 5386178 (+) True G34580
TU46539 lncRNA downstream 46314 5788758 ~ 5793818 (+) True G34602
TU46590 lncRNA downstream 102458 5844902 ~ 5847925 (+) True G34636
TU46601 lncRNA downstream 171797 5914241 ~ 5916402 (+) True G34644
TU46622 lncRNA downstream 224244 5966688 ~ 5967194 (+) True G34657
TU46808 lncRNA downstream 300402 6042846 ~ 6043340 (+) True G34790
XM_007259238.3 mRNA upstream 55451 5669067 ~ 5684163 (+) True cpn1
XM_007259239.3 mRNA upstream 85937 5642317 ~ 5653677 (+) True LOC103038312
XM_022668950.1 mRNA upstream 97819 5615695 ~ 5641795 (+) False gpam
XM_022668951.1 mRNA upstream 97819 5618006 ~ 5641795 (+) True gpam
XM_007259244.3 mRNA upstream 132223 5596081 ~ 5607391 (+) False LOC103039360
XM_022668956.1 mRNA downstream 15628 5758072 ~ 5764882 (+) True LOC107197899
XM_022668957.1 mRNA downstream 23412 5765856 ~ 5771877 (+) True LOC103045303
XM_022668960.1 mRNA downstream 64718 5807162 ~ 5819997 (+) False casp7
XM_022668959.1 mRNA downstream 64780 5807224 ~ 5819997 (+) False casp7
XM_007259254.3 mRNA downstream 66330 5808774 ~ 5819997 (+) False casp7
TU46176 other upstream 1561531 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 3682740 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 3902038 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 4351595 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 4617742 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 877226 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 877227 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 988510 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 1159973 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 4730930 10473374 ~ 10474792 (+) False G35744

Expression Profile