RNA id: TU46590


Basic Information

Item Value
RNA id TU46590
length 440
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G34636
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5844902 ~ 5847925 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATAAATACTGATGTTGTTTTTGACTTCAGGTTGTATGTTTGTCACATCCCCTGAGTGAGTGAAGGTCCAGCCTGTGGGCTTGAAAGCCACCAGTTGATCATATGATTGTGAATGTTTATGCAAGTGTGCCTCTAAATTCTTGAAATTGAGTTGCATCATGGGGAGAACGTGGACCCGAGCTGCCTTCGGATCTGTGGTGATACACTGGCAAATCTGCTTGGACTCCAGACAGCACATGGTGTTATACCTATCCCTAGACATGTACACCTTAGAAGCCAGCACATCAGATATGGCCAAGAAAACCTTCTCTTTCCCCACAGCGTAAGTGCCACACACCACCAGCGTCCGAGGGTTGAGTGTGACCAGCTCGAAGGCTGTGTTAGCAGCAAAAGTTATCACCTCCTGCTGAGTGGGAAAGGCATATTCTGGACTGCAGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46539 lncRNA upstream 51084 5788758 ~ 5793818 (+) True G34602
TU46556 lncRNA upstream 102458 5739614 ~ 5742444 (+) True G34615
TU46540 lncRNA upstream 133047 5692540 ~ 5711855 (+) False dnmbp
TU46544 lncRNA upstream 185000 5659266 ~ 5659902 (+) True G34606
TU46543 lncRNA upstream 185703 5658969 ~ 5659199 (+) True G34605
TU46601 lncRNA downstream 66316 5914241 ~ 5916402 (+) True G34644
TU46622 lncRNA downstream 118763 5966688 ~ 5967194 (+) True G34657
TU46808 lncRNA downstream 194921 6042846 ~ 6043340 (+) True G34790
TU46881 lncRNA downstream 407681 6255606 ~ 6258050 (+) True LOC103045604
TU46883 lncRNA downstream 410628 6258553 ~ 6258814 (+) True G34841
XM_022668962.1 mRNA upstream 3059 5829634 ~ 5841843 (+) True plekhs1
XM_022668963.1 mRNA upstream 3059 5829636 ~ 5841843 (+) False plekhs1
XM_007259255.3 mRNA upstream 3059 5831007 ~ 5841843 (+) False plekhs1
XM_015608337.2 mRNA upstream 16893 5824388 ~ 5828009 (+) True LOC107197901
XM_022668961.1 mRNA upstream 16893 5824388 ~ 5828009 (+) False LOC107197901
XM_007259257.3 mRNA downstream 4982 5852907 ~ 5875214 (+) True nhlrc2
XM_007259258.3 mRNA downstream 39119 5887044 ~ 5891991 (+) True adrb1
XM_022668965.1 mRNA downstream 56181 5904106 ~ 5948629 (+) False tdrd1
XM_022668967.1 mRNA downstream 88069 5935994 ~ 5948628 (+) False tdrd1
XM_007259262.3 mRNA downstream 88070 5935995 ~ 5948629 (+) True tdrd1
TU46176 other upstream 1666819 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 3788028 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 4007326 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 4456883 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 4723030 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 771745 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 771746 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 883029 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 1054492 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 4625449 10473374 ~ 10474792 (+) False G35744

Expression Profile