RNA id: TU46622


Basic Information

Item Value
RNA id TU46622
length 455
lncRNA type intronic
GC content 0.51
exon number 2
gene id G34657
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5966688 ~ 5967194 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccgagtggtccagcggtctaaagcgctgccactatgagcaggttcgaaccccagcggtctaaagtgctgccactatgtcgaaccccagctcatgcagctttgccatcaagctgccggcgttagagggagcaaaattggccctgctccctctgggtgggtagatggcgctctttccccacatcactcctatgctgtgctttcctccaagcgcgctggctgctcggcaatgctgcatcagcaagcagctcgaaaagaagcggtggctgacttcacatgtgtcggaggaagcatgtgttagtcttcaccctcctggtgtgttgaggtatcactagtgatagggggagtcctaatgagtgggttgggtaattggctgtgtaaattggggagaaaatgggaaaaaaaaaaaaaaaattgataattGTGTGCATTGTAGATGTAAAGGTCTTACTAATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46601 lncRNA upstream 50286 5914241 ~ 5916402 (+) True G34644
TU46590 lncRNA upstream 118763 5844902 ~ 5847925 (+) True G34636
TU46539 lncRNA upstream 172870 5788758 ~ 5793818 (+) True G34602
TU46556 lncRNA upstream 224244 5739614 ~ 5742444 (+) True G34615
TU46540 lncRNA upstream 254833 5692540 ~ 5711855 (+) False dnmbp
TU46808 lncRNA downstream 75652 6042846 ~ 6043340 (+) True G34790
TU46881 lncRNA downstream 288412 6255606 ~ 6258050 (+) True LOC103045604
TU46883 lncRNA downstream 291359 6258553 ~ 6258814 (+) True G34841
TU46884 lncRNA downstream 299115 6266309 ~ 6266668 (+) True G34842
TU46879 lncRNA downstream 301234 6268428 ~ 6270954 (+) True G34837
XM_022668965.1 mRNA upstream 18059 5904106 ~ 5948629 (+) False tdrd1
XM_007259262.3 mRNA upstream 18059 5935995 ~ 5948629 (+) True tdrd1
XM_022668966.1 mRNA upstream 18059 5935995 ~ 5948629 (+) False tdrd1
XM_022668967.1 mRNA upstream 18060 5935994 ~ 5948628 (+) False tdrd1
XM_007259258.3 mRNA upstream 74697 5887044 ~ 5891991 (+) True adrb1
XM_022668974.1 mRNA downstream 32812 6000006 ~ 6002530 (+) True LOC111192358
XM_007259273.3 mRNA downstream 182093 6149287 ~ 6152869 (+) True trub1
XM_007259292.3 mRNA downstream 213630 6180824 ~ 6185239 (+) True LOC103024806
XM_022669011.1 mRNA downstream 279452 6246646 ~ 6255637 (+) False LOC103045604
XM_007259300.3 mRNA downstream 547309 6514503 ~ 6541364 (+) True slc38a10
TU46176 other upstream 1788605 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 3909814 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 4129112 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 4578669 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 4844816 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 652476 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 652477 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 763760 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 935223 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 4506180 10473374 ~ 10474792 (+) False G35744

Expression Profile