RNA id: TU46695



Basic Information


Item Value
RNA id TU46695
length 200
lncRNA type intronic
GC content 0.46
exon number 1
gene id G34708
representative True

Chromosome Information


Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5644906 ~ 5645105 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CTTATCTTATCTATGATTACGCAATGACATACCCATGGAGGAAAGTAGTCATGTGGCTTAAAGTAtgattcctctctctctgtccagtCCCCCAGGTCTGCCTGTAAGGCATATGCAGCCAGTTGGAAGTACTGGCCTTCCTGTCCAGAACATTGTGAGCACAAAACTCTGCCTTTTAAGTCAGCATAGTACAGACTGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46673 lncRNA downstream 70148 5573473 ~ 5574758 (-) True G34688
TU46666 lncRNA downstream 253586 5391095 ~ 5391320 (-) True G34682
TU46475 lncRNA downstream 451047 5191033 ~ 5193859 (-) True G34556
TU46458 lncRNA downstream 492493 5151372 ~ 5152413 (-) True G34543
TU46460 lncRNA downstream 493943 5150310 ~ 5150963 (-) True G34544
TU46700 lncRNA upstream 13919 5659024 ~ 5659904 (-) True G34713
TU46707 lncRNA upstream 32313 5677418 ~ 5681939 (-) True G34719
TU46759 lncRNA upstream 217352 5862457 ~ 5867932 (-) True G34760
TU46770 lncRNA upstream 241933 5887038 ~ 5891991 (-) True G34765
TU46774 lncRNA upstream 282584 5927689 ~ 6012669 (-) True G34769
XM_022668952.1 mRNA downstream 48468 5579330 ~ 5596438 (-) False acsl5
XM_015608339.2 mRNA downstream 48468 5579330 ~ 5596438 (-) True acsl5
XM_022668946.1 mRNA downstream 73272 5400928 ~ 5571634 (-) False vti1a
XM_022668948.1 mRNA downstream 73272 5400928 ~ 5571634 (-) True vti1a
XM_022668947.1 mRNA downstream 73273 5400928 ~ 5571633 (-) False vti1a
XM_007259249.2 mRNA upstream 126514 5771619 ~ 5803122 (-) True nrap
XM_007259251.3 mRNA upstream 173617 5818722 ~ 5822431 (-) True LOC103041412
XM_007259256.3 mRNA upstream 197873 5842978 ~ 5852808 (-) True dclre1a
XM_007259261.3 mRNA upstream 258483 5903588 ~ 5928154 (-) True ccdc186
XM_022668970.1 mRNA upstream 283456 5928561 ~ 5934694 (-) False LOC103043680
XR_002649848.1 other downstream 282421 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 1761437 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 1855714 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 1855800 3783408 ~ 3789106 (-) False prr15l
TU45984 other downstream 1855842 3783408 ~ 3789064 (-) False prr15l
XR_455628.3 other upstream 262869 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 290730 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 820263 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 891916 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 974575 6619680 ~ 6653585 (-) True G34981