RNA id: TU46833


Basic Information

Item Value
RNA id TU46833
length 1855
lncRNA type sense_over
GC content 0.43
exon number 3
gene id ablim1
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6049001 ~ 6147311 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttactttagcatttcacatcacatgtgtgtgttctgttctgTAGCCCATCCAAGATGGCCAGGTCACCATAACCAGAATGGACAGGGGAATGTCTATGCCTAATATGTTGGAGCACAAAGTGTATCCATATGAAATGCTCACTGTCACCAACAGAGGGCGTGCTAAGCTCCCGAAGGACGTGGACAGGACAAGACTGGAGcGTCACTTGTCCTCAGAGGTGTTCTTCAACATCTTCAGAATGGAAATCCATGAGTTTGACAGACTTCCACTGTGGAAGCGCAATGACATGAAGAAGAAAGCCAAGCTCTTCTAGCTGGGAATctgcatgtttttaatttatcagCCACTCCAATAATGTATGATAGCTATAGTcttcagatttttttccttttcctttatttttctccttttgTTTCTAGTTTTCCATTTTTGGTTTGCTTTCTGACAGTCTGATAAATAAGTTATCTCCTTTTTGCTTCAAGAAGACAACCACCCCTTCATTTGTTCCAGGATGCAGAGTTTTCATAGGAGTGGAAGTTAGGTTAGGAGTCAAATACAGTGCGATTTAACTCTTCAGGGGAGAGGCCATCGTCTCTGTACTCTCATTAAAGCTGCCTTCAGAGCAGACGCTTTCTCCACTGCTACTCTTTCCTGCCCATCTCATAAAACAGGACTGCAATTTCTGGGGTTGAAGGGGAGAACCTGAAGGCTATCGGCAGGGTTCTTCCTCTAAAGAGGCTAATAAAGCGTTGGAGGCAGAGGAGTTCCAGCGGCCCCCTGCCGCTTGGGCCCTAACAAGGGCCTTGATGTGTATTAACAGGGGGAAGTGAGAGCTACTGTGTGGAGCTGAAGATGACAGACCTCAGTCCCACCTGCGGCTGAAAAAGGCCCGGGTTTTGGCTCTGGAAGACATTAGAACCTGAAGAGACGTCTCTGCTGTGGCCCACCTACCTGTAGCCCATCTCCTCTCAAGCCCTGAACCCTTGCAGAAGCTTCTCACAACCAAAAATGCTCCTCCTGAGCTGGATGCTCGTCCTCTAGCCTTTTTACTTCAGTCTTCTAGTTTTTAACATATTAGCTAATGTTGTATTTGACATTTGAACGCCCACTTCTTGCTGACTCTAAACAAAAGAAGCAGGAATGCCCACCACTAGAGGTCAGGCTTGTGTCATGGAGAGGGTCCTCCAAGGTTCTCCTCGGACCTCTCCATTGTACCACTGAATTTGACAATCCTCTCCTTTTAACCACTATTGCAAAActgcaatatataaatatctatatcTTTTAACAGCATATCACTTTGACTAAActaaatttggaaaaaaaagtatttgataTTGAACACGTTTTATAAAGCCGAAGTATTTCAAACTGCCACTGTGTTGCTGGAGGATTGACGGAGCTGTAGCCATAGCATTTGTGCCAGGTGTAGGTTTGATATCAGGGCCCTATCTGCCATTCTGTTTAAAGCTGCCAGACGATGCCGTTCCCATAGACACTGGGTGTGCTTGCAGTAGTGTTATGGGCTGTTGCTGACCTTTATTCCCAGGAGTGTCCTGTGTTGCTAACAGGGTTAAACTTTGAACTGggaaatttaaaaagtatatatatagagagagatatatggttttataatatcacaaaacatatatatatatatatatatatatatatataacaaactTATGGTGACTCTTAGAACCCAACCTATTTCACACGTACAATGGAATGAAGAAAACGTTGGTTTTGATACCCATGCAGTGTTCCTCAcccttttgtcttttttgaaGGAAAGATTTGATGACAATGATGTAAAATCTTGACTGAGTAATAAAACTCTGCTTCAGATTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46809 lncRNA downstream 5567 6042925 ~ 6043439 (-) True G34791
TU46774 lncRNA downstream 36337 5927689 ~ 6012669 (-) True G34769
TU46770 lncRNA downstream 157015 5887038 ~ 5891991 (-) True G34765
TU46759 lncRNA downstream 181074 5862457 ~ 5867932 (-) True G34760
TU46707 lncRNA downstream 367067 5677418 ~ 5681939 (-) True G34719
TU46866 lncRNA upstream 96792 6149230 ~ 6152861 (-) True G34829
TU47029 lncRNA upstream 307473 6359911 ~ 6360378 (-) True G34939
TU47030 lncRNA upstream 314342 6366780 ~ 6368106 (-) False LOC103026268
TU47047 lncRNA upstream 490735 6543173 ~ 6546514 (-) False ndufaf8
TU47088 lncRNA upstream 623141 6675579 ~ 6679954 (-) True G34987
XM_022668972.1 mRNA downstream 10414 5980989 ~ 6038592 (-) False afap1l2
XM_007259269.3 mRNA downstream 10414 5980989 ~ 6038592 (-) False afap1l2
XM_022668971.1 mRNA downstream 10414 5980989 ~ 6038592 (-) False afap1l2
XM_007259268.3 mRNA downstream 10414 5980989 ~ 6038592 (-) True afap1l2
XM_022668973.1 mRNA downstream 17685 5980989 ~ 6031321 (-) False afap1l2
XM_022669009.1 mRNA upstream 101256 6153694 ~ 6178101 (-) False pgs1
XM_007259271.3 mRNA upstream 101256 6153694 ~ 6178101 (-) True pgs1
XM_022669010.1 mRNA upstream 105059 6157497 ~ 6178101 (-) False pgs1
XM_007259293.3 mRNA upstream 203966 6256404 ~ 6266677 (-) True tmem235
XM_007259294.2 mRNA upstream 215963 6268401 ~ 6270943 (-) True birc5
TU46775 other downstream 109606 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 120852 5907974 ~ 5928154 (-) False ccdc186
XR_002649848.1 other downstream 686521 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 2165537 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 2259814 3783408 ~ 3789192 (-) False prr15l
TU47031 other upstream 412930 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 484583 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 567242 6619680 ~ 6653585 (-) True G34981
TU47717 other upstream 2872390 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 3152132 9204570 ~ 9205911 (-) True G35512

Expression Profile