RNA id: TU46866


Basic Information

Item Value
RNA id TU46866
length 1373
lncRNA type inter_gene
GC content 0.32
exon number 8
gene id G34829
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6149230 ~ 6152861 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGAGCAtctttttaatcacaaatattgATCAACCAAAATGTCACCAGCAGTCACTGATCAGAAATAATCTGAACTAATAAATAACACTTTGGATAAAGGCATCAGTCATCCGAACACTGTTCTGAACCATCAATACCATAAAGAAGCCGTGTATAACTCAGTACTTTTAGTTGCAGTAAGTGATCACTCGCTGCATAGTTACATTCCAAAATCAGCACTtaatatttgtttgtaaagcatataaaaaaggaatgatgtcacaaaaaaaaaaacagaaataaaacaaagattCAGAGTTTGTGGTCAAAGGCAAGCCATTCCCTCTGTCACTAAAGGAAGAGAGTATACTGAGATCTAAGGCTCTGCTAGCACCTCCCTCTAGTCATTGTGATCTGCACTGGAACCTTCAGCTGTGATGTGATTGTGATCTCCAGCAGAACTTTCAGAACCAGGCTGGGTGGGTTTCCtgtgtggtttgttttttttgctgttgttctGCTGAGGCGCAGGCTCTGGGCAGGGCTGTAAGGACTGGGAAATGTCCTGGAAGGTCCAGCGTTCCTCCCTCAACACATGTTCCTCCAGCGTAAACTGACCCTGCTTAGTTCTAATCAGTTCCCGAATATGAGCACACGAGGACAGAGCTTTTCCCAGATCATCCACCAGGCTTCTGACATAAAACCCTCCACCACACTCGACATCTAAAGTGAATAGTGGTGGATTGAAGTCTTGTAGTGTGAGGTTGTAAACTGTTACTGGTCGTGCAGGCTTAGCCTCTACTTCTTGCCCTTgctttaataaaacagaaagaCGCTTGCCATCTTTTTTCAGTGCTGAATACAGAGGAGGGACCTGCATGATTTCCCCAGTAAACTCCTTCAGCTTTTCTTCAAAAGCCTCTCTTGTAATGTgatCATAGTTATTCTCTTGAACAACACTTCCTGTACAATCCAGAGTGTCAGTTGCTTTGCCCAGCTCTCCAACCGCAGTGTATTTCTTAGACCCAGCAAGCATTGTGGTGAGCATCTTGGTCCCTTCACCTATTCCAACCAcaaGAACACCAGAAGCATTGCTGTCTAAGGTCCCACCATGGCCAATCTTTACAGCTTGTTTCTTCCTCTTTCGACAGTTCGGATTGGCTACTCCAGCCTctttcagaagcttgtttttaAGCGTGTTTAACACATCAGCAGAGGTCGGTCCCTGTTTCTTATATATGGAGAAAATCCCGTTTAGAGAGTTTAACCTAGATAAAGAAACGCTGTTGACATTAGCCATGCTGTTCGGCAGTCAGGCGCACGAAGATGACGTACCCAAACGACGGGGTCCCTTAaattattgtgtaaaaaaaaaaaataaaaaaaaaaaactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46833 lncRNA downstream 96792 6049006 ~ 6052438 (-) False ablim1
TU46809 lncRNA downstream 105791 6042925 ~ 6043439 (-) True G34791
TU46774 lncRNA downstream 136561 5927689 ~ 6012669 (-) True G34769
TU46770 lncRNA downstream 257239 5887038 ~ 5891991 (-) True G34765
TU46759 lncRNA downstream 281298 5862457 ~ 5867932 (-) True G34760
TU47029 lncRNA upstream 207050 6359911 ~ 6360378 (-) True G34939
TU47030 lncRNA upstream 213919 6366780 ~ 6368106 (-) False LOC103026268
TU47047 lncRNA upstream 390312 6543173 ~ 6546514 (-) False ndufaf8
TU47088 lncRNA upstream 522718 6675579 ~ 6679954 (-) True G34987
TU47089 lncRNA upstream 527490 6680351 ~ 6680909 (-) True G34988
XM_015608376.2 mRNA downstream 1919 6049001 ~ 6147311 (-) True ablim1
XM_022668995.1 mRNA downstream 27550 6049001 ~ 6121680 (-) False ablim1
XM_022669001.1 mRNA downstream 27550 6049001 ~ 6121680 (-) False ablim1
XM_022668979.1 mRNA downstream 27550 6049001 ~ 6121680 (-) False ablim1
XM_015608377.2 mRNA downstream 27550 6050568 ~ 6121680 (-) False ablim1
XM_022669009.1 mRNA upstream 833 6153694 ~ 6178101 (-) False pgs1
XM_007259271.3 mRNA upstream 833 6153694 ~ 6178101 (-) True pgs1
XM_022669010.1 mRNA upstream 4636 6157497 ~ 6178101 (-) False pgs1
XM_007259293.3 mRNA upstream 103543 6256404 ~ 6266677 (-) True tmem235
XM_007259294.2 mRNA upstream 115540 6268401 ~ 6270943 (-) True birc5
TU46775 other downstream 209830 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 221076 5907974 ~ 5928154 (-) False ccdc186
XR_002649848.1 other downstream 786745 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 2265761 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 2360038 3783408 ~ 3789192 (-) False prr15l
TU47031 other upstream 312507 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 384160 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 466819 6619680 ~ 6653585 (-) True G34981
TU47717 other upstream 2771967 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 3051709 9204570 ~ 9205911 (-) True G35512

Expression Profile