RNA id: TU46898


Basic Information

Item Value
RNA id TU46898
length 1842
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G34855
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6285549 ~ 6287415 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTGTCGGATTGAGACAAATCTGTTATTGGCGGCCTGAAACACCACCTGTGGATGGCTTTCTTCCAGATCAAACAACTCATCCTTGCCTGGTTTGGAGCAGCGTCCTGAACGTAAGGTGCCTGTTGGCCCCATGGGGCTCAAGTACTTTCCTTCACAGTCCTTGAAAGCTAATTTACCAGATTTCAGTTCCAGGGTATATCCTGTTCCGCGACCATTTTCAAAAGACAGCTTCCCATCACTGCTTAGAAACCGGCTGTCACAGGTCTTTAGGCAGTATTTGCCATCTACGTAAACCAGGGTTAGGAGAGCATCGACGCCCCACGGGATGTTGCTGTCCACAGCTATCTCACCCTCAGGTGCAGACAGGTGGGCATAGCGCTTGCGAGCTACGCTTAGCAAGTTTGCTTGTGGGTGCAGGGCCAGGTGCATGGCCCACAGCTCTGCTTCACCAATGGTCTGAGCAAAGCAGGACAGATAGTCTTTTGACCCTCCAAAAAAGCGCAGATGTGGCTCGGACTGCAGGGCCCAGCGACCGTCTGACTGTGCGACAATTAGGAACCTGCAGTCGCTCTCTTGTGACTCAGCCTCGCAACTCACCTTGCCATCTTTATCAGATGCCAGGTAGCGGCCCAAGTGGCTCCGCAGGTACACGACCTGCCCATCTTTCTCATCTTGCTCAAGTGTCCAGATCTGCTTTTTCTTGAGACTTGGTGCTGAAGCGTTCACTTTGAACCCAAATGCCTCTGCAGTTAAGTAACGGCTCTCAAAGTTAATCAGCCCAAATTGGAGCTTGAGGGCTTTATTGCCATTTGTGGGCATTGTCGTCCACTCAGGTGAATGCAGGAGAAGATTGCAGGAGCAGATATGAAACTGATTAACAGAAGCGATATATTTCCCACAAAGGATGAAGTTTTCAAAAAACAACAAGCTTCCTGATTTACTTGCCTggtgtctctttttttcttgtaaatCTTCTGATAAATATCTGCCTTTTCTTATTAGTTTGGTTCTTGGATTTGTCGGTcttctttcagtgttttcttcAGGTCCTTGGCCTCTTCTCTAAGTAAAAAAAGACTTCTCTTGTCTTGCTCCCCAGACAGCTTGCTGAGGCTCTgagttttttcttctgtttcctAATCAGCTCAGATTAAAATCAGCAGGACTCAACACCTCAATCCAGTGAGCTGTTGACGTCACCTTGATCCCACCGGTTCTTTCTCTTCCCTGCTTTTCTCACTCCCCTTTTTCCTACTCCCGTGCTCCTATTGCTCTATGTTCTATTGCTCGTTTCACCTCACCAATCTTAGTCtggtctgtgtctgtctgtctttccagTGGCTACCTGTGGGATTACCAAAAAACTGATCTCCTAAAGTGATGCTGTCCAAGGCCGAGCAGCACAGCGTGACTCCCCTCTTGCTGCTCCTCTTGTCTCTTCTTTCCTGTCTAGTTGATTAATTTCTGTgcctctttttcctcttctcaGTGCTGTTCCTTCATTCATATCTTAGTTTTCCACCTGATTGGGCTTGAGTTTGATTGGTGGGTGGAAACGGGTGCTCTACAAGATCTCCAAAGGCAGGCCCTTAGCAAGACTTAGACATGCTCTGTTCCCAGAAGGATGGCCATTTAATTAAGGCCGTTACTAGCACAAATGCTATCTAGCACTGATAGTGCATCTGCACAATGCAATAAAACTTGCAGCAAAACATGCACTACGCACcagctttttcttttcctctttttccttgatttgtattttttcagcCTTTTTCCTCTTCCTTGCTGGTCTTATTCCATAAACCCTTTTCTGAGGCCCTGTAATCCACCCTTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46879 lncRNA upstream 14595 6268428 ~ 6270954 (+) True G34837
TU46884 lncRNA upstream 18881 6266309 ~ 6266668 (+) True G34842
TU46883 lncRNA upstream 26735 6258553 ~ 6258814 (+) True G34841
TU46881 lncRNA upstream 27499 6255606 ~ 6258050 (+) True LOC103045604
TU46808 lncRNA upstream 242209 6042846 ~ 6043340 (+) True G34790
XR_002649859.1 lncRNA downstream 5384 6292799 ~ 6296716 (+) True LOC111192359
XR_002649900.1 lncRNA downstream 25206 6312621 ~ 6322293 (+) True LOC111192400
TU46924 lncRNA downstream 25300 6312715 ~ 6322293 (+) False LOC111192400
TU46931 lncRNA downstream 79269 6366684 ~ 6368113 (+) False G34880
TU46930 lncRNA downstream 79335 6366750 ~ 6369281 (+) True G34880
XM_022669011.1 mRNA upstream 29912 6246646 ~ 6255637 (+) False LOC103045604
XM_007259292.3 mRNA upstream 100310 6180824 ~ 6185239 (+) True LOC103024806
XM_007259273.3 mRNA upstream 132680 6149287 ~ 6152869 (+) True trub1
XM_022668974.1 mRNA upstream 283019 6000006 ~ 6002530 (+) True LOC111192358
XM_007259270.3 mRNA upstream 304332 5949544 ~ 5981217 (+) True vwa2
XM_007259300.3 mRNA downstream 227088 6514503 ~ 6541364 (+) True slc38a10
XM_022669014.1 mRNA downstream 227088 6514503 ~ 6541364 (+) False slc38a10
XM_007259299.3 mRNA downstream 227088 6514503 ~ 6541364 (+) False slc38a10
XM_022669015.1 mRNA downstream 230297 6517712 ~ 6541364 (+) False slc38a10
XM_007259298.3 mRNA downstream 260135 6547550 ~ 6553218 (+) True tepsin
TU46176 other upstream 2107466 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 4228675 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 4447973 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 4897530 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 5163677 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 332255 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 332256 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 443539 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 615002 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 4185959 10473374 ~ 10474792 (+) False G35744

Expression Profile