RNA id: XR_002649900.1


Basic Information

Item Value
RNA id XR_002649900.1
length 824
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC111192400
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6312621 ~ 6322293 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGATGTGGCAAATTCCTGTTCATTGTTAATTCTGTGTTTAATCTGTCACAACAGCTCGTTTATTCATGTACATTTAAGAGAGTTACAGTATGGGAGCACTGTGGGGCTCAGTAATTAGTGATGTCGCTCTCTGAAAACAGGTGGGAAAAATACAAACCCACTGTAGTTCTGAGTTTAGAAACGAACTCGGTTCAAATTCAAGGTAAACCTGGGTGCAGCAGTCTGGAATATGCGCCTGAACGCAGCTAAAACAGCACTGAGGACCTTCAGTTGACCGTGTGCTCTCAGAATATTCTCTTGTACACACTGTGGTAGTGTGAGGATGAGTGGCCAGGAAGTTACTGGAGACAGAGGTGGTGTTGATACCCAAAAAGCTTGCGAATCAGgagagagagagaaatataaagaTGCACAAGGGAGGAAAAGGTGGCCCGTTTACACTACTGTAGAATTATGTTTTGCTTGTTTACACTGTTCTAGTATTTATCTATACTAAGTTTTAATTGTTTCCCTAATTCACtctaatatagatttttttccatacaaGCTGTTCTAGATTGTTGTGCTTGTACAGACTGTTCTACGAAATTCTGTCTGTTTCCCATTCAATGTTCTCACCACTCTACCCATTTACACTGTTCCTGAATGTTATCTCTAGTATCAACATTTTGGGATTGTTCTTCCCCATTCAACCTCTAAAATGTTCTCTTTTGcctgtttacactgttatcTTTACTATGCCAGATTGGAACTgtttcatatactgtatatggaaAAGGGAAAGGTAAAAGGTGAAGAAGCAATAAACGAATTGCCCAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649859.1 lncRNA upstream 15905 6292799 ~ 6296716 (+) True LOC111192359
TU46898 lncRNA upstream 25206 6285549 ~ 6287415 (+) True G34855
TU46879 lncRNA upstream 41667 6268428 ~ 6270954 (+) True G34837
TU46884 lncRNA upstream 45953 6266309 ~ 6266668 (+) True G34842
TU46883 lncRNA upstream 53807 6258553 ~ 6258814 (+) True G34841
TU46931 lncRNA downstream 44391 6366684 ~ 6368113 (+) False G34880
TU46930 lncRNA downstream 44457 6366750 ~ 6369281 (+) True G34880
TU46932 lncRNA downstream 44457 6366750 ~ 6368113 (+) False G34880
TU46923 lncRNA downstream 48234 6370527 ~ 6370758 (+) True G34873
XR_002649860.1 lncRNA downstream 49635 6371928 ~ 6372750 (+) True LOC111192360
XM_022669011.1 mRNA upstream 56984 6246646 ~ 6255637 (+) False LOC103045604
XM_007259292.3 mRNA upstream 127382 6180824 ~ 6185239 (+) True LOC103024806
XM_007259273.3 mRNA upstream 159752 6149287 ~ 6152869 (+) True trub1
XM_022668974.1 mRNA upstream 310091 6000006 ~ 6002530 (+) True LOC111192358
XM_007259270.3 mRNA upstream 331404 5949544 ~ 5981217 (+) True vwa2
XM_007259300.3 mRNA downstream 192210 6514503 ~ 6541364 (+) True slc38a10
XM_022669014.1 mRNA downstream 192210 6514503 ~ 6541364 (+) False slc38a10
XM_007259299.3 mRNA downstream 192210 6514503 ~ 6541364 (+) False slc38a10
XM_022669015.1 mRNA downstream 195419 6517712 ~ 6541364 (+) False slc38a10
XM_007259298.3 mRNA downstream 225257 6547550 ~ 6553218 (+) True tepsin
TU46176 other upstream 2134538 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 4255747 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 4475045 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 4924602 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 5190749 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 297377 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 297378 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 408661 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 580124 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 4151081 10473374 ~ 10474792 (+) False G35744

Expression Profile