RNA id: TU47029


Basic Information

Item Value
RNA id TU47029
length 468
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G34939
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6359911 ~ 6360378 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttctaaagttaagctaactgagtcacaagctgtattttattaaacacacagtgggtttaatttatgttttgattcagagaagagtctttttaaccagctatcagaaacaatctcatcacagtttacatggttaattacctttcttttagaaaaatctccgtatatccagattagttttaacgacagctgctccgactagctgcctgaactcacagcgaggggaggggcggggcttcccgcacactaaactgcgctccgcaaaaccagctaactgattggctgtttctcctgaaaggcgggactttctccttgaaccggcaccacgattggttaagagacacacagcggtcagtgcattgtcgcctgtggcctatatattttttaatttagtataatacgggaaatttacgggaaaatactaatacgggaggacggcgggaaagaggagtaaaatacggtagtttcccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46866 lncRNA downstream 207050 6149230 ~ 6152861 (-) True G34829
TU46833 lncRNA downstream 307473 6049006 ~ 6052438 (-) False ablim1
TU46809 lncRNA downstream 316472 6042925 ~ 6043439 (-) True G34791
TU46774 lncRNA downstream 347242 5927689 ~ 6012669 (-) True G34769
TU46770 lncRNA downstream 467920 5887038 ~ 5891991 (-) True G34765
TU47030 lncRNA upstream 6402 6366780 ~ 6368106 (-) False LOC103026268
TU47047 lncRNA upstream 182795 6543173 ~ 6546514 (-) False ndufaf8
TU47088 lncRNA upstream 315201 6675579 ~ 6679954 (-) True G34987
TU47089 lncRNA upstream 319973 6680351 ~ 6680909 (-) True G34988
TU47093 lncRNA upstream 327912 6688290 ~ 6689610 (-) False LOC103030829
XM_007259296.3 mRNA downstream 72278 6273871 ~ 6287633 (-) True LOC103025956
XM_007259294.2 mRNA downstream 88968 6268401 ~ 6270943 (-) True birc5
XM_007259293.3 mRNA downstream 93234 6256404 ~ 6266677 (-) True tmem235
XM_022669009.1 mRNA downstream 181810 6153694 ~ 6178101 (-) False pgs1
XM_007259271.3 mRNA downstream 181810 6153694 ~ 6178101 (-) True pgs1
XM_022669012.1 mRNA upstream 6306 6366684 ~ 6513584 (-) False LOC103026268
XM_007259297.3 mRNA upstream 6306 6366684 ~ 6477290 (-) True LOC103026268
XM_015608380.2 mRNA upstream 6306 6366684 ~ 6469983 (-) False LOC103026268
XM_015608363.2 mRNA upstream 182766 6543144 ~ 6546582 (-) True ndufaf8
XM_022669016.1 mRNA upstream 182766 6543144 ~ 6546559 (-) False ndufaf8
TU46775 other downstream 420511 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 431757 5907974 ~ 5928154 (-) False ccdc186
XR_002649848.1 other downstream 997426 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 2476442 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 2570719 3783408 ~ 3789192 (-) False prr15l
TU47031 other upstream 104990 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 176643 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 259302 6619680 ~ 6653585 (-) True G34981
TU47717 other upstream 2564450 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 2844192 9204570 ~ 9205911 (-) True G35512

Expression Profile